Chapter 14 The InnoDB Storage Engine

Table of Contents

14.1 Introduction to InnoDB
14.1.1 Benefits of Using InnoDB Tables
14.1.2 Best Practices for InnoDB Tables
14.1.3 Verifying that InnoDB is the Default Storage Engine
14.1.4 Testing and Benchmarking with InnoDB
14.1.5 Turning Off InnoDB
14.2 InnoDB and the ACID Model
14.3 InnoDB Multi-Versioning
14.4 InnoDB Architecture
14.5 InnoDB In-Memory Structures
14.5.1 Buffer Pool
14.5.2 Change Buffer
14.5.3 Adaptive Hash Index
14.5.4 Log Buffer
14.6 InnoDB On-Disk Structures
14.6.1 Tables
14.6.2 Indexes
14.6.3 Tablespaces
14.6.4 InnoDB Data Dictionary
14.6.5 Doublewrite Buffer
14.6.6 Redo Log
14.6.7 Undo Logs
14.7 InnoDB Locking and Transaction Model
14.7.1 InnoDB Locking
14.7.2 InnoDB Transaction Model
14.7.3 Locks Set by Different SQL Statements in InnoDB
14.7.4 Phantom Rows
14.7.5 Deadlocks in InnoDB
14.8 InnoDB Configuration
14.8.1 InnoDB Startup Configuration
14.8.2 Configuring InnoDB for Read-Only Operation
14.8.3 InnoDB Buffer Pool Configuration
14.8.4 Configuring the Memory Allocator for InnoDB
14.8.5 Configuring Thread Concurrency for InnoDB
14.8.6 Configuring the Number of Background InnoDB I/O Threads
14.8.7 Using Asynchronous I/O on Linux
14.8.8 Configuring InnoDB I/O Capacity
14.8.9 Configuring Spin Lock Polling
14.8.10 Purge Configuration
14.8.11 Configuring Optimizer Statistics for InnoDB
14.8.12 Configuring the Merge Threshold for Index Pages
14.9 InnoDB Table and Page Compression
14.9.1 InnoDB Table Compression
14.9.2 InnoDB Page Compression
14.10 InnoDB File-Format Management
14.10.1 Enabling File Formats
14.10.2 Verifying File Format Compatibility
14.10.3 Identifying the File Format in Use
14.10.4 Modifying the File Format
14.11 InnoDB Row Formats
14.12 InnoDB Disk I/O and File Space Management
14.12.1 InnoDB Disk I/O
14.12.2 File Space Management
14.12.3 InnoDB Checkpoints
14.12.4 Defragmenting a Table
14.12.5 Reclaiming Disk Space with TRUNCATE TABLE
14.13 InnoDB and Online DDL
14.13.1 Online DDL Operations
14.13.2 Online DDL Performance and Concurrency
14.13.3 Online DDL Space Requirements
14.13.4 Simplifying DDL Statements with Online DDL
14.13.5 Online DDL Failure Conditions
14.13.6 Online DDL Limitations
14.14 InnoDB Data-at-Rest Encryption
14.15 InnoDB Startup Options and System Variables
14.16 InnoDB INFORMATION_SCHEMA Tables
14.16.1 InnoDB INFORMATION_SCHEMA Tables about Compression
14.16.2 InnoDB INFORMATION_SCHEMA Transaction and Locking Information
14.16.3 InnoDB INFORMATION_SCHEMA System Tables
14.16.4 InnoDB INFORMATION_SCHEMA FULLTEXT Index Tables
14.16.5 InnoDB INFORMATION_SCHEMA Buffer Pool Tables
14.16.6 InnoDB INFORMATION_SCHEMA Metrics Table
14.16.7 InnoDB INFORMATION_SCHEMA Temporary Table Info Table
14.16.8 Retrieving InnoDB Tablespace Metadata from INFORMATION_SCHEMA.FILES
14.17 InnoDB Integration with MySQL Performance Schema
14.17.1 Monitoring ALTER TABLE Progress for InnoDB Tables Using Performance Schema
14.17.2 Monitoring InnoDB Mutex Waits Using Performance Schema
14.18 InnoDB Monitors
14.18.1 InnoDB Monitor Types
14.18.2 Enabling InnoDB Monitors
14.18.3 InnoDB Standard Monitor and Lock Monitor Output
14.19 InnoDB Backup and Recovery
14.19.1 InnoDB Backup
14.19.2 InnoDB Recovery
14.20 InnoDB and MySQL Replication
14.21 InnoDB memcached Plugin
14.21.1 Benefits of the InnoDB memcached Plugin
14.21.2 InnoDB memcached Architecture
14.21.3 Setting Up the InnoDB memcached Plugin
14.21.4 Security Considerations for the InnoDB memcached Plugin
14.21.5 Writing Applications for the InnoDB memcached Plugin
14.21.6 The InnoDB memcached Plugin and Replication
14.21.7 InnoDB memcached Plugin Internals
14.21.8 Troubleshooting the InnoDB memcached Plugin
14.22 InnoDB Troubleshooting
14.22.1 Troubleshooting InnoDB I/O Problems
14.22.2 Forcing InnoDB Recovery
14.22.3 Troubleshooting InnoDB Data Dictionary Operations
14.22.4 InnoDB Error Handling
14.23 InnoDB Limits
14.24 InnoDB Restrictions and Limitations

14.1 Introduction to InnoDB

InnoDB is a general-purpose storage engine that balances high reliability and high performance. In MySQL 5.7, InnoDB is the default MySQL storage engine. Unless you have configured a different default storage engine, issuing a CREATE TABLE statement without an ENGINE= clause creates an InnoDB table.

Key Advantages of InnoDB

Table 14.1 InnoDB Storage Engine Features

Feature Support
B-tree indexes Yes
Backup/point-in-time recovery (Implemented in the server, rather than in the storage engine.) Yes
Cluster database support No
Clustered indexes Yes
Compressed data Yes
Data caches Yes
Encrypted data Yes (Implemented in the server via encryption functions; In MySQL 5.7 and later, data-at-rest tablespace encryption is supported.)
Foreign key support Yes
Full-text search indexes Yes (InnoDB support for FULLTEXT indexes is available in MySQL 5.6 and later.)
Geospatial data type support Yes
Geospatial indexing support Yes (InnoDB support for geospatial indexing is available in MySQL 5.7 and later.)
Hash indexes No (InnoDB utilizes hash indexes internally for its Adaptive Hash Index feature.)
Index caches Yes
Locking granularity Row
MVCC Yes
Replication support (Implemented in the server, rather than in the storage engine.) Yes
Storage limits 64TB
T-tree indexes No
Transactions Yes
Update statistics for data dictionary Yes

To compare the features of InnoDB with other storage engines provided with MySQL, see the Storage Engine Features table in Chapter 15, Alternative Storage Engines.

InnoDB Enhancements and New Features

For information about InnoDB enhancements and new features, refer to:

Additional InnoDB Information and Resources

14.1.1 Benefits of Using InnoDB Tables

You may find InnoDB tables beneficial for the following reasons:

  • If your server crashes because of a hardware or software issue, regardless of what was happening in the database at the time, you don't need to do anything special after restarting the database. InnoDB crash recovery automatically finalizes any changes that were committed before the time of the crash, and undoes any changes that were in process but not committed. Just restart and continue where you left off.

  • The InnoDB storage engine maintains its own buffer pool that caches table and index data in main memory as data is accessed. Frequently used data is processed directly from memory. This cache applies to many types of information and speeds up processing. On dedicated database servers, up to 80% of physical memory is often assigned to the buffer pool.

  • If you split up related data into different tables, you can set up foreign keys that enforce referential integrity. Update or delete data, and the related data in other tables is updated or deleted automatically. Try to insert data into a secondary table without corresponding data in the primary table, and the bad data gets kicked out automatically.

  • If data becomes corrupted on disk or in memory, a checksum mechanism alerts you to the bogus data before you use it.

  • When you design your database with appropriate primary key columns for each table, operations involving those columns are automatically optimized. It is very fast to reference the primary key columns in WHERE clauses, ORDER BY clauses, GROUP BY clauses, and join operations.

  • Inserts, updates, and deletes are optimized by an automatic mechanism called change buffering. InnoDB not only allows concurrent read and write access to the same table, it caches changed data to streamline disk I/O.

  • Performance benefits are not limited to giant tables with long-running queries. When the same rows are accessed over and over from a table, a feature called the Adaptive Hash Index takes over to make these lookups even faster, as if they came out of a hash table.

  • You can compress tables and associated indexes.

  • You can create and drop indexes with much less impact on performance and availability.

  • Truncating a file-per-table tablespace is very fast, and can free up disk space for the operating system to reuse, rather than freeing up space within the system tablespace that only InnoDB can reuse.

  • The storage layout for table data is more efficient for BLOB and long text fields, with the DYNAMIC row format.

  • You can monitor the internal workings of the storage engine by querying INFORMATION_SCHEMA tables.

  • You can monitor the performance details of the storage engine by querying Performance Schema tables.

  • You can freely mix InnoDB tables with tables from other MySQL storage engines, even within the same statement. For example, you can use a join operation to combine data from InnoDB and MEMORY tables in a single query.

  • InnoDB has been designed for CPU efficiency and maximum performance when processing large data volumes.

  • InnoDB tables can handle large quantities of data, even on operating systems where file size is limited to 2GB.

For InnoDB-specific tuning techniques you can apply in your application code, see Section 8.5, “Optimizing for InnoDB Tables”.

14.1.2 Best Practices for InnoDB Tables

This section describes best practices when using InnoDB tables.

  • Specifying a primary key for every table using the most frequently queried column or columns, or an auto-increment value if there is no obvious primary key.

  • Using joins wherever data is pulled from multiple tables based on identical ID values from those tables. For fast join performance, define foreign keys on the join columns, and declare those columns with the same data type in each table. Adding foreign keys ensures that referenced columns are indexed, which can improve performance. Foreign keys also propagate deletes or updates to all affected tables, and prevent insertion of data in a child table if the corresponding IDs are not present in the parent table.

  • Turning off autocommit. Committing hundreds of times a second puts a cap on performance (limited by the write speed of your storage device).

  • Grouping sets of related DML operations into transactions, by bracketing them with START TRANSACTION and COMMIT statements. While you don't want to commit too often, you also don't want to issue huge batches of INSERT, UPDATE, or DELETE statements that run for hours without committing.

  • Not using LOCK TABLES statements. InnoDB can handle multiple sessions all reading and writing to the same table at once, without sacrificing reliability or high performance. To get exclusive write access to a set of rows, use the SELECT ... FOR UPDATE syntax to lock just the rows you intend to update.

  • Enabling the innodb_file_per_table option or using general tablespaces to put the data and indexes for tables into separate files, instead of the system tablespace.

    The innodb_file_per_table option is enabled by default.

  • Evaluating whether your data and access patterns benefit from the InnoDB table or page compression features. You can compress InnoDB tables without sacrificing read/write capability.

  • Running your server with the option --sql_mode=NO_ENGINE_SUBSTITUTION to prevent tables being created with a different storage engine if there is an issue with the engine specified in the ENGINE= clause of CREATE TABLE.

14.1.3 Verifying that InnoDB is the Default Storage Engine

Issue the SHOW ENGINES statement to view the available MySQL storage engines. Look for DEFAULT in the InnoDB line.

mysql> SHOW ENGINES;

Alternatively, query the INFORMATION_SCHEMA.ENGINES table.

mysql> SELECT * FROM INFORMATION_SCHEMA.ENGINES;

14.1.4 Testing and Benchmarking with InnoDB

If InnoDB is not your default storage engine, you can determine if your database server or applications work correctly with InnoDB by restarting the server with --default-storage-engine=InnoDB defined on the command line or with default-storage-engine=innodb defined in the [mysqld] section of your MySQL server option file.

Since changing the default storage engine only affects new tables as they are created, run all your application installation and setup steps to confirm that everything installs properly. Then exercise all the application features to make sure all the data loading, editing, and querying features work. If a table relies on a feature that is specific to another storage engine, you will receive an error; add the ENGINE=other_engine_name clause to the CREATE TABLE statement to avoid the error.

If you did not make a deliberate decision about the storage engine, and you want to preview how certain tables work when created using InnoDB, issue the command ALTER TABLE table_name ENGINE=InnoDB; for each table. Or, to run test queries and other statements without disturbing the original table, make a copy:

CREATE TABLE InnoDB_Table (...) ENGINE=InnoDB AS SELECT * FROM other_engine_table;

To assess performance with a full application under a realistic workload, install the latest MySQL server and run benchmarks.

Test the full application lifecycle, from installation, through heavy usage, and server restart. Kill the server process while the database is busy to simulate a power failure, and verify that the data is recovered successfully when you restart the server.

Test any replication configurations, especially if you use different MySQL versions and options on the master and slaves.

14.1.5 Turning Off InnoDB

Oracle recommends InnoDB as the preferred storage engine for typical database applications, from single-user wikis and blogs running on a local system, to high-end applications pushing the limits of performance. In MySQL 5.7, InnoDB is the default storage engine for new tables.

Important

InnoDB cannot be disabled. The --skip-innodb option is deprecated and has no effect, and its use results in a warning. It will be removed in a future MySQL release. This also applies to its synonyms (--innodb=OFF, --disable-innodb, and so forth).

14.2 InnoDB and the ACID Model

The ACID model is a set of database design principles that emphasize aspects of reliability that are important for business data and mission-critical applications. MySQL includes components such as the InnoDB storage engine that adhere closely to the ACID model, so that data is not corrupted and results are not distorted by exceptional conditions such as software crashes and hardware malfunctions. When you rely on ACID-compliant features, you do not need to reinvent the wheel of consistency checking and crash recovery mechanisms. In cases where you have additional software safeguards, ultra-reliable hardware, or an application that can tolerate a small amount of data loss or inconsistency, you can adjust MySQL settings to trade some of the ACID reliability for greater performance or throughput.

The following sections discuss how MySQL features, in particular the InnoDB storage engine, interact with the categories of the ACID model:

  • A: atomicity.

  • C: consistency.

  • I:: isolation.

  • D: durability.

Atomicity

The atomicity aspect of the ACID model mainly involves InnoDB transactions. Related MySQL features include:

  • Autocommit setting.

  • COMMIT statement.

  • ROLLBACK statement.

  • Operational data from the INFORMATION_SCHEMA tables.

Consistency

The consistency aspect of the ACID model mainly involves internal InnoDB processing to protect data from crashes. Related MySQL features include:

Isolation

The isolation aspect of the ACID model mainly involves InnoDB transactions, in particular the isolation level that applies to each transaction. Related MySQL features include:

  • Autocommit setting.

  • SET ISOLATION LEVEL statement.

  • The low-level details of InnoDB locking. During performance tuning, you see these details through INFORMATION_SCHEMA tables.

Durability

The durability aspect of the ACID model involves MySQL software features interacting with your particular hardware configuration. Because of the many possibilities depending on the capabilities of your CPU, network, and storage devices, this aspect is the most complicated to provide concrete guidelines for. (And those guidelines might take the form of buy new hardware.) Related MySQL features include:

  • InnoDB doublewrite buffer, turned on and off by the innodb_doublewrite configuration option.

  • Configuration option innodb_flush_log_at_trx_commit.

  • Configuration option sync_binlog.

  • Configuration option innodb_file_per_table.

  • Write buffer in a storage device, such as a disk drive, SSD, or RAID array.

  • Battery-backed cache in a storage device.

  • The operating system used to run MySQL, in particular its support for the fsync() system call.

  • Uninterruptible power supply (UPS) protecting the electrical power to all computer servers and storage devices that run MySQL servers and store MySQL data.

  • Your backup strategy, such as frequency and types of backups, and backup retention periods.

  • For distributed or hosted data applications, the particular characteristics of the data centers where the hardware for the MySQL servers is located, and network connections between the data centers.

14.3 InnoDB Multi-Versioning

InnoDB is a multi-versioned storage engine: it keeps information about old versions of changed rows, to support transactional features such as concurrency and rollback. This information is stored in the tablespace in a data structure called a rollback segment (after an analogous data structure in Oracle). InnoDB uses the information in the rollback segment to perform the undo operations needed in a transaction rollback. It also uses the information to build earlier versions of a row for a consistent read.

Internally, InnoDB adds three fields to each row stored in the database. A 6-byte DB_TRX_ID field indicates the transaction identifier for the last transaction that inserted or updated the row. Also, a deletion is treated internally as an update where a special bit in the row is set to mark it as deleted. Each row also contains a 7-byte DB_ROLL_PTR field called the roll pointer. The roll pointer points to an undo log record written to the rollback segment. If the row was updated, the undo log record contains the information necessary to rebuild the content of the row before it was updated. A 6-byte DB_ROW_ID field contains a row ID that increases monotonically as new rows are inserted. If InnoDB generates a clustered index automatically, the index contains row ID values. Otherwise, the DB_ROW_ID column does not appear in any index.

Undo logs in the rollback segment are divided into insert and update undo logs. Insert undo logs are needed only in transaction rollback and can be discarded as soon as the transaction commits. Update undo logs are used also in consistent reads, but they can be discarded only after there is no transaction present for which InnoDB has assigned a snapshot that in a consistent read could need the information in the update undo log to build an earlier version of a database row.

Commit your transactions regularly, including those transactions that issue only consistent reads. Otherwise, InnoDB cannot discard data from the update undo logs, and the rollback segment may grow too big, filling up your tablespace.

The physical size of an undo log record in the rollback segment is typically smaller than the corresponding inserted or updated row. You can use this information to calculate the space needed for your rollback segment.

In the InnoDB multi-versioning scheme, a row is not physically removed from the database immediately when you delete it with an SQL statement. InnoDB only physically removes the corresponding row and its index records when it discards the update undo log record written for the deletion. This removal operation is called a purge, and it is quite fast, usually taking the same order of time as the SQL statement that did the deletion.

If you insert and delete rows in smallish batches at about the same rate in the table, the purge thread can start to lag behind and the table can grow bigger and bigger because of all the dead rows, making everything disk-bound and very slow. In such a case, throttle new row operations, and allocate more resources to the purge thread by tuning the innodb_max_purge_lag system variable. See Section 14.15, “InnoDB Startup Options and System Variables” for more information.

Multi-Versioning and Secondary Indexes

InnoDB multiversion concurrency control (MVCC) treats secondary indexes differently than clustered indexes. Records in a clustered index are updated in-place, and their hidden system columns point undo log entries from which earlier versions of records can be reconstructed. Unlike clustered index records, secondary index records do not contain hidden system columns nor are they updated in-place.

When a secondary index column is updated, old secondary index records are delete-marked, new records are inserted, and delete-marked records are eventually purged. When a secondary index record is delete-marked or the secondary index page is updated by a newer transaction, InnoDB looks up the database record in the clustered index. In the clustered index, the record's DB_TRX_ID is checked, and the correct version of the record is retrieved from the undo log if the record was modified after the reading transaction was initiated.

If a secondary index record is marked for deletion or the secondary index page is updated by a newer transaction, the covering index technique is not used. Instead of returning values from the index structure, InnoDB looks up the record in the clustered index.

However, if the index condition pushdown (ICP) optimization is enabled, and parts of the WHERE condition can be evaluated using only fields from the index, the MySQL server still pushes this part of the WHERE condition down to the storage engine where it is evaluated using the index. If no matching records are found, the clustered index lookup is avoided. If matching records are found, even among delete-marked records, InnoDB looks up the record in the clustered index.

14.4 InnoDB Architecture

The following diagram shows in-memory and on-disk structures that comprise the InnoDB storage engine architecture. For information about each structure, see Section 14.5, “InnoDB In-Memory Structures”, and Section 14.6, “InnoDB On-Disk Structures”.

Figure 14.1 InnoDB Architecture

InnoDB architecture diagram showing in-memory and on-disk structures.

14.5 InnoDB In-Memory Structures

This section describes InnoDB in-memory structures and related topics.

14.5.1 Buffer Pool

The buffer pool is an area in main memory where InnoDB caches table and index data as it is accessed. The buffer pool permits frequently used data to be processed directly from memory, which speeds up processing. On dedicated servers, up to 80% of physical memory is often assigned to the buffer pool.

For efficiency of high-volume read operations, the buffer pool is divided into pages that can potentially hold multiple rows. For efficiency of cache management, the buffer pool is implemented as a linked list of pages; data that is rarely used is aged out of the cache using a variation of the LRU algorithm.

Knowing how to take advantage of the buffer pool to keep frequently accessed data in memory is an important aspect of MySQL tuning.

Buffer Pool LRU Algorithm

The buffer pool is managed as a list using a variation of the least recently used (LRU) algorithm. When room is needed to add a new page to the buffer pool, the least recently used page is evicted and a new page is added to the middle of the list. This midpoint insertion strategy treats the list as two sublists:

  • At the head, a sublist of new (young) pages that were accessed recently

  • At the tail, a sublist of old pages that were accessed less recently

Figure 14.2 Buffer Pool List

Content is described in the surrounding text.

The algorithm keeps heavily pages in the new sublist. The old sublist contains less-used pages; these pages are candidates for eviction.

By default, the algorithm operates as follows:

  • 3/8 of the buffer pool is devoted to the old sublist.

  • The midpoint of the list is the boundary where the tail of the new sublist meets the head of the old sublist.

  • When InnoDB reads a page into the buffer pool, it initially inserts it at the midpoint (the head of the old sublist). A page can be read because it is required for a user-initiated operation such as an SQL query, or as part of a read-ahead operation performed automatically by InnoDB.

  • Accessing a page in the old sublist makes it young, moving it to the head of the new sublist. If the page was read because it was required by a user-initiated operation, the first access occurs immediately and the page is made young. If the page was read due to a read-ahead operation, the first access does not occur immediately, and might not occur at all before the page is evicted.

  • As the database operates, pages in the buffer pool that are not accessed age by moving toward the tail of the list. Pages in both the new and old sublists age as other pages are made new. Pages in the old sublist also age as pages are inserted at the midpoint. Eventually, a page that remains unused reaches the tail of the old sublist and is evicted.

By default, pages read by queries are immediately moved into the new sublist, meaning they stay in the buffer pool longer. A table scan, performed for a mysqldump operation or a SELECT statement with no WHERE clause, for example, can bring a large amount of data into the buffer pool and evict an equivalent amount of older data, even if the new data is never used again. Similarly, pages that are loaded by the read-ahead background thread and accessed only once are moved to the head of the new list. These situations can push frequently used pages to the old sublist where they become subject to eviction. For information about optimizing this behavior, see Section 14.8.3.3, “Making the Buffer Pool Scan Resistant”, and Section 14.8.3.4, “Configuring InnoDB Buffer Pool Prefetching (Read-Ahead)”.

InnoDB Standard Monitor output contains several fields in the BUFFER POOL AND MEMORY section regarding operation of the buffer pool LRU algorithm. For details, see Monitoring the Buffer Pool Using the InnoDB Standard Monitor.

Buffer Pool Configuration

You can configure the various aspects of the buffer pool to improve performance.

Monitoring the Buffer Pool Using the InnoDB Standard Monitor

InnoDB Standard Monitor output, which can be accessed using SHOW ENGINE INNODB STATUS, provides metrics regarding operation of the buffer pool. Buffer pool metrics are located in the BUFFER POOL AND MEMORY section of InnoDB Standard Monitor output and appear similar to the following:

----------------------
BUFFER POOL AND MEMORY
----------------------
Total large memory allocated 2198863872
Dictionary memory allocated 776332
Buffer pool size   131072
Free buffers       124908
Database pages     5720
Old database pages 2071
Modified db pages  910
Pending reads 0
Pending writes: LRU 0, flush list 0, single page 0
Pages made young 4, not young 0
0.10 youngs/s, 0.00 non-youngs/s
Pages read 197, created 5523, written 5060
0.00 reads/s, 190.89 creates/s, 244.94 writes/s
Buffer pool hit rate 1000 / 1000, young-making rate 0 / 1000 not
0 / 1000
Pages read ahead 0.00/s, evicted without access 0.00/s, Random read
ahead 0.00/s
LRU len: 5720, unzip_LRU len: 0
I/O sum[0]:cur[0], unzip sum[0]:cur[0]

The following table describes buffer pool metrics reported by the InnoDB Standard Monitor.

Note

Per second averages provided in InnoDB Standard Monitor output are based on the elapsed time since InnoDB Standard Monitor output was last printed.

Table 14.2 InnoDB Buffer Pool Metrics

Name Description
Total memory allocated The total memory allocated for the buffer pool in bytes.
Dictionary memory allocated The total memory allocated for the InnoDB data dictionary in bytes.
Buffer pool size The total size in pages allocated to the buffer pool.
Free buffers The total size in pages of the buffer pool free list.
Database pages The total size in pages of the buffer pool LRU list.
Old database pages The total size in pages of the buffer pool old LRU sublist.
Modified db pages The current number of pages modified in the buffer pool.
Pending reads The number of buffer pool pages waiting to be read into the buffer pool.
Pending writes LRU The number of old dirty pages within the buffer pool to be written from the bottom of the LRU list.
Pending writes flush list The number of buffer pool pages to be flushed during checkpointing.
Pending writes single page The number of pending independent page writes within the buffer pool.
Pages made young The total number of pages made young in the buffer pool LRU list (moved to the head of sublist of new pages).
Pages made not young The total number of pages not made young in the buffer pool LRU list (pages that have remained in the old sublist without being made young).
youngs/s The per second average of accesses to old pages in the buffer pool LRU list that have resulted in making pages young. See the notes that follow this table for more information.
non-youngs/s The per second average of accesses to old pages in the buffer pool LRU list that have resulted in not making pages young. See the notes that follow this table for more information.
Pages read The total number of pages read from the buffer pool.
Pages created The total number of pages created within the buffer pool.
Pages written The total number of pages written from the buffer pool.
reads/s The per second average number of buffer pool page reads per second.
creates/s The per second average number of buffer pool pages created per second.
writes/s The per second average number of buffer pool page writes per second.
Buffer pool hit rate The buffer pool page hit rate for pages read from the buffer pool memory vs from disk storage.
young-making rate The average hit rate at which page accesses have resulted in making pages young. See the notes that follow this table for more information.
not (young-making rate) The average hit rate at which page accesses have not resulted in making pages young. See the notes that follow this table for more information.
Pages read ahead The per second average of read ahead operations.
Pages evicted without access The per second average of the pages evicted without being accessed from the buffer pool.
Random read ahead The per second average of random read ahead operations.
LRU len The total size in pages of the buffer pool LRU list.
unzip_LRU len The total size in pages of the buffer pool unzip_LRU list.
I/O sum The total number of buffer pool LRU list pages accessed, for the last 50 seconds.
I/O cur The total number of buffer pool LRU list pages accessed.
I/O unzip sum The total number of buffer pool unzip_LRU list pages accessed.
I/O unzip cur The total number of buffer pool unzip_LRU list pages accessed.

Notes:

  • The youngs/s metric is applicable only to old pages. It is based on the number of accesses to pages and not the number of pages. There can be multiple accesses to a given page, all of which are counted. If you see very low youngs/s values when there are no large scans occurring, you might need to reduce the delay time or increase the percentage of the buffer pool used for the old sublist. Increasing the percentage makes the old sublist larger, so pages in that sublist take longer to move to the tail, which increases the likelihood that those pages will be accessed again and made young.

  • The non-youngs/s metric is applicable only to old pages. It is based on the number of accesses to pages and not the number of pages. There can be multiple accesses to a given page, all of which are counted. If you do not see a higher non-youngs/s value when performing large table scans (and a higher youngs/s value), increase the delay value.

  • The young-making rate accounts for accesses to all buffer pool pages, not just accesses to pages in the old sublist. The young-making rate and not rate do not normally add up to the overall buffer pool hit rate. Page hits in the old sublist cause pages to move to the new sublist, but page hits in the new sublist cause pages to move to the head of the list only if they are a certain distance from the head.

  • not (young-making rate) is the average hit rate at which page accesses have not resulted in making pages young due to the delay defined by innodb_old_blocks_time not being met, or due to page hits in the new sublist that did not result in pages being moved to the head. This rate accounts for accesses to all buffer pool pages, not just accesses to pages in the old sublist.

Buffer pool server status variables and the INNODB_BUFFER_POOL_STATS table provide many of the same buffer pool metrics found in InnoDB Standard Monitor output. For more information, see Example 14.10, “Querying the INNODB_BUFFER_POOL_STATS Table”.

14.5.2 Change Buffer

The change buffer is a special data structure that caches changes to secondary index pages when those pages are not in the buffer pool. The buffered changes, which may result from INSERT, UPDATE, or DELETE operations (DML), are merged later when the pages are loaded into the buffer pool by other read operations.

Figure 14.3 Change Buffer

Content is described in the surrounding text.

Unlike clustered indexes, secondary indexes are usually nonunique, and inserts into secondary indexes happen in a relatively random order. Similarly, deletes and updates may affect secondary index pages that are not adjacently located in an index tree. Merging cached changes at a later time, when affected pages are read into the buffer pool by other operations, avoids substantial random access I/O that would be required to read secondary index pages into the buffer pool from disk.

Periodically, the purge operation that runs when the system is mostly idle, or during a slow shutdown, writes the updated index pages to disk. The purge operation can write disk blocks for a series of index values more efficiently than if each value were written to disk immediately.

Change buffer merging may take several hours when there are many affected rows and numerous secondary indexes to update. During this time, disk I/O is increased, which can cause a significant slowdown for disk-bound queries. Change buffer merging may also continue to occur after a transaction is committed, and even after a server shutdown and restart (see Section 14.22.2, “Forcing InnoDB Recovery” for more information).

In memory, the change buffer occupies part of the buffer pool. On disk, the change buffer is part of the system tablespace, where index changes are buffered when the database server is shut down.

The type of data cached in the change buffer is governed by the innodb_change_buffering variable. For more information, see Configuring Change Buffering. You can also configure the maximum change buffer size. For more information, see Configuring the Change Buffer Maximum Size.

Change buffering is not supported for a secondary index if the index contains a descending index column or if the primary key includes a descending index column.

For answers to frequently asked questions about the change buffer, see Section A.16, “MySQL 5.7 FAQ: InnoDB Change Buffer”.

Configuring Change Buffering

When INSERT, UPDATE, and DELETE operations are performed on a table, the values of indexed columns (particularly the values of secondary keys) are often in an unsorted order, requiring substantial I/O to bring secondary indexes up to date. The change buffer caches changes to secondary index entries when the relevant page is not in the buffer pool, thus avoiding expensive I/O operations by not immediately reading in the page from disk. The buffered changes are merged when the page is loaded into the buffer pool, and the updated page is later flushed to disk. The InnoDB main thread merges buffered changes when the server is nearly idle, and during a slow shutdown.

Because it can result in fewer disk reads and writes, the change buffer feature is most valuable for workloads that are I/O-bound, for example applications with a high volume of DML operations such as bulk inserts.

However, the change buffer occupies a part of the buffer pool, reducing the memory available to cache data pages. If the working set almost fits in the buffer pool, or if your tables have relatively few secondary indexes, it may be useful to disable change buffering. If the working data set fits entirely within the buffer pool, change buffering does not impose extra overhead, because it only applies to pages that are not in the buffer pool.

You can control the extent to which InnoDB performs change buffering using the innodb_change_buffering configuration parameter. You can enable or disable buffering for inserts, delete operations (when index records are initially marked for deletion) and purge operations (when index records are physically deleted). An update operation is a combination of an insert and a delete. The default innodb_change_buffering value is all.

Permitted innodb_change_buffering values include:

  • all

    The default value: buffer inserts, delete-marking operations, and purges.

  • none

    Do not buffer any operations.

  • inserts

    Buffer insert operations.

  • deletes

    Buffer delete-marking operations.

  • changes

    Buffer both inserts and delete-marking operations.

  • purges

    Buffer physical deletion operations that happen in the background.

You can set the innodb_change_buffering parameter in the MySQL option file (my.cnf or my.ini) or change it dynamically with the SET GLOBAL statement, which requires privileges sufficient to set global system variables. See Section 5.1.8.1, “System Variable Privileges”. Changing the setting affects the buffering of new operations; the merging of existing buffered entries is not affected.

Configuring the Change Buffer Maximum Size

The innodb_change_buffer_max_size variable permits configuring the maximum size of the change buffer as a percentage of the total size of the buffer pool. By default, innodb_change_buffer_max_size is set to 25. The maximum setting is 50.

Consider increasing innodb_change_buffer_max_size on a MySQL server with heavy insert, update, and delete activity, where change buffer merging does not keep pace with new change buffer entries, causing the change buffer to reach its maximum size limit.

Consider decreasing innodb_change_buffer_max_size on a MySQL server with static data used for reporting, or if the change buffer consumes too much of the memory space shared with the buffer pool, causing pages to age out of the buffer pool sooner than desired.

Test different settings with a representative workload to determine an optimal configuration. The innodb_change_buffer_max_size setting is dynamic, which permits modifying the setting without restarting the server.

Monitoring the Change Buffer

The following options are available for change buffer monitoring:

  • InnoDB Standard Monitor output includes change buffer status information. To view monitor data, issue the SHOW ENGINE INNODB STATUS statement.

    mysql> SHOW ENGINE INNODB STATUS\G
    

    Change buffer status information is located under the INSERT BUFFER AND ADAPTIVE HASH INDEX heading and appears similar to the following:

    -------------------------------------
    INSERT BUFFER AND ADAPTIVE HASH INDEX
    -------------------------------------
    Ibuf: size 1, free list len 0, seg size 2, 0 merges
    merged operations:
     insert 0, delete mark 0, delete 0
    discarded operations:
     insert 0, delete mark 0, delete 0
    Hash table size 4425293, used cells 32, node heap has 1 buffer(s)
    13577.57 hash searches/s, 202.47 non-hash searches/s

    For more information, see Section 14.18.3, “InnoDB Standard Monitor and Lock Monitor Output”.

  • The INFORMATION_SCHEMA.INNODB_METRICS table provides most of the data points found in InnoDB Standard Monitor output, plus other data points. To view change buffer metrics and a description of each, issue the following query:

    mysql> SELECT NAME, COMMENT FROM INFORMATION_SCHEMA.INNODB_METRICS WHERE NAME LIKE '%ibuf%'\G
    

    For INNODB_METRICS table usage information, see Section 14.16.6, “InnoDB INFORMATION_SCHEMA Metrics Table”.

  • The INFORMATION_SCHEMA.INNODB_BUFFER_PAGE table provides metadata about each page in the buffer pool, including change buffer index and change buffer bitmap pages. Change buffer pages are identified by PAGE_TYPE. IBUF_INDEX is the page type for change buffer index pages, and IBUF_BITMAP is the page type for change buffer bitmap pages.

    Warning

    Querying the INNODB_BUFFER_PAGE table can introduce significant performance overhead. To avoid impacting performance, reproduce the issue you want to investigate on a test instance and run your queries on the test instance.

    For example, you can query the INNODB_BUFFER_PAGE table to determine the approximate number of IBUF_INDEX and IBUF_BITMAP pages as a percentage of total buffer pool pages.

    mysql> SELECT (SELECT COUNT(*) FROM INFORMATION_SCHEMA.INNODB_BUFFER_PAGE
           WHERE PAGE_TYPE LIKE 'IBUF%') AS change_buffer_pages, 
           (SELECT COUNT(*) FROM INFORMATION_SCHEMA.INNODB_BUFFER_PAGE) AS total_pages,
           (SELECT ((change_buffer_pages/total_pages)*100)) 
           AS change_buffer_page_percentage;
    +---------------------+-------------+-------------------------------+
    | change_buffer_pages | total_pages | change_buffer_page_percentage |
    +---------------------+-------------+-------------------------------+
    |                  25 |        8192 |                        0.3052 |
    +---------------------+-------------+-------------------------------+
    

    For information about other data provided by the INNODB_BUFFER_PAGE table, see Section 24.32.1, “The INFORMATION_SCHEMA INNODB_BUFFER_PAGE Table”. For related usage information, see Section 14.16.5, “InnoDB INFORMATION_SCHEMA Buffer Pool Tables”.

  • Performance Schema provides change buffer mutex wait instrumentation for advanced performance monitoring. To view change buffer instrumentation, issue the following query:

    mysql> SELECT * FROM performance_schema.setup_instruments
           WHERE NAME LIKE '%wait/synch/mutex/innodb/ibuf%';
    +-------------------------------------------------------+---------+-------+
    | NAME                                                  | ENABLED | TIMED |
    +-------------------------------------------------------+---------+-------+
    | wait/synch/mutex/innodb/ibuf_bitmap_mutex             | YES     | YES   |
    | wait/synch/mutex/innodb/ibuf_mutex                    | YES     | YES   |
    | wait/synch/mutex/innodb/ibuf_pessimistic_insert_mutex | YES     | YES   |
    +-------------------------------------------------------+---------+-------+
    

    For information about monitoring InnoDB mutex waits, see Section 14.17.2, “Monitoring InnoDB Mutex Waits Using Performance Schema”.

14.5.3 Adaptive Hash Index

The adaptive hash index feature enables InnoDB to perform more like an in-memory database on systems with appropriate combinations of workload and sufficient memory for the buffer pool without sacrificing transactional features or reliability. The adaptive hash index feature is enabled by the innodb_adaptive_hash_index variable, or turned off at server startup by --skip-innodb-adaptive-hash-index.

Based on the observed pattern of searches, a hash index is built using a prefix of the index key. The prefix can be any length, and it may be that only some values in the B-tree appear in the hash index. Hash indexes are built on demand for the pages of the index that are accessed often.

If a table fits almost entirely in main memory, a hash index can speed up queries by enabling direct lookup of any element, turning the index value into a sort of pointer. InnoDB has a mechanism that monitors index searches. If InnoDB notices that queries could benefit from building a hash index, it does so automatically.

With some workloads, the speedup from hash index lookups greatly outweighs the extra work to monitor index lookups and maintain the hash index structure. Access to the adaptive hash index can sometimes become a source of contention under heavy workloads, such as multiple concurrent joins. Queries with LIKE operators and % wildcards also tend not to benefit. For workloads that do not benefit from the adaptive hash index feature, turning it off reduces unnecessary performance overhead. Because it is difficult to predict in advance whether the adaptive hash index feature is appropriate for a particular system and workload, consider running benchmarks with it enabled and disabled. Architectural changes in MySQL 5.6 make it more suitable to disable the adaptive hash index feature than in earlier releases.

In MySQL 5.7, the adaptive hash index feature is partitioned. Each index is bound to a specific partition, and each partition is protected by a separate latch. Partitioning is controlled by the innodb_adaptive_hash_index_parts variable. In earlier releases, the adaptive hash index feature was protected by a single latch which could become a point of contention under heavy workloads. The innodb_adaptive_hash_index_parts variable is set to 8 by default. The maximum setting is 512.

You can monitor adaptive hash index use and contention in the SEMAPHORES section of SHOW ENGINE INNODB STATUS output. If there are numerous threads waiting on RW-latches created in btr0sea.c, consider increasing the number of adaptive hash index partitions or disabling the adaptive hash index feature.

For information about the performance characteristics of hash indexes, see Section 8.3.8, “Comparison of B-Tree and Hash Indexes”.

14.5.4 Log Buffer

The log buffer is the memory area that holds data to be written to the log files on disk. Log buffer size is defined by the innodb_log_buffer_size variable. The default size is 16MB. The contents of the log buffer are periodically flushed to disk. A large log buffer enables large transactions to run without the need to write redo log data to disk before the transactions commit. Thus, if you have transactions that update, insert, or delete many rows, increasing the size of the log buffer saves disk I/O.

The innodb_flush_log_at_trx_commit variable controls how the contents of the log buffer are written and flushed to disk. The innodb_flush_log_at_timeout variable controls log flushing frequency.

For related information, see Memory Configuration, and Section 8.5.4, “Optimizing InnoDB Redo Logging”.

14.6 InnoDB On-Disk Structures

This section describes InnoDB on-disk structures and related topics.

14.6.1 Tables

This section covers topics related to InnoDB tables.

14.6.1.1 Creating InnoDB Tables

To create an InnoDB table, use the CREATE TABLE statement.

CREATE TABLE t1 (a INT, b CHAR (20), PRIMARY KEY (a)) ENGINE=InnoDB;

You do not need to specify the ENGINE=InnoDB clause if InnoDB is defined as the default storage engine, which it is by default. To check the default storage engine, issue the following statement:

mysql> SELECT @@default_storage_engine;
+--------------------------+
| @@default_storage_engine |
+--------------------------+
| InnoDB                   |
+--------------------------+

You might still use ENGINE=InnoDB clause if you plan to use mysqldump or replication to replay the CREATE TABLE statement on a server where the default storage engine is not InnoDB.

An InnoDB table and its indexes can be created in the system tablespace, in a file-per-table tablespace, or in a general tablespace. When innodb_file_per_table is enabled, which is the default, an InnoDB table is implicitly created in an individual file-per-table tablespace. Conversely, when innodb_file_per_table is disabled, an InnoDB table is implicitly created in the InnoDB system tablespace. To create a table in a general tablespace, use CREATE TABLE ... TABLESPACE syntax. For more information, see Section 14.6.3.3, “General Tablespaces”.

When you create an InnoDB table, MySQL creates a .frm file in the database directory under the MySQL data directory. For more information about .frm files, see InnoDB Tables and .frm Files. For a table created in a file-per-table tablespace, MySQL also creates an .ibd tablespace file in the database directory, by default. A table created in the InnoDB system tablespace is created in an existing ibdata file, which resides in the MySQL data directory. A table created in a general tablespace is created in an existing general tablespace .ibd file. General tablespace files can be created inside or outside of the MySQL data directory. For more information, see Section 14.6.3.3, “General Tablespaces”.

Internally, InnoDB adds an entry for each table to the InnoDB data dictionary. The entry includes the database name. For example, if table t1 is created in the test database, the data dictionary entry for the database name is 'test/t1'. This means you can create a table of the same name (t1) in a different database, and the table names do not collide inside InnoDB.

InnoDB Tables and .frm Files

MySQL stores data dictionary information for tables in .frm files in database directories. Unlike other MySQL storage engines, InnoDB also encodes information about the table in its own internal data dictionary inside the system tablespace. When MySQL drops a table or a database, it deletes one or more .frm files as well as the corresponding entries inside the InnoDB data dictionary. You cannot move InnoDB tables between databases simply by moving the .frm files. For information about moving InnoDB tables, see Section 14.6.1.4, “Moving or Copying InnoDB Tables”.

InnoDB Tables and Row Formats

The default row format for InnoDB tables is defined by the innodb_default_row_format configuration option, which has a default value of DYNAMIC. Dynamic and Compressed row format allow you to take advantage of InnoDB features such as table compression and efficient off-page storage of long column values. To use these row formats, innodb_file_per_table must be enabled (the default as of MySQL 5.6.6) and innodb_file_format must be set to Barracuda.

SET GLOBAL innodb_file_per_table=1;
SET GLOBAL innodb_file_format=barracuda;
CREATE TABLE t3 (a INT, b CHAR (20), PRIMARY KEY (a)) ROW_FORMAT=DYNAMIC;
CREATE TABLE t4 (a INT, b CHAR (20), PRIMARY KEY (a)) ROW_FORMAT=COMPRESSED;

Alternatively, you can use CREATE TABLE ... TABLESPACE syntax to create an InnoDB table in a general tablespace. General tablespaces support all row formats. For more information, see Section 14.6.3.3, “General Tablespaces”.

CREATE TABLE t1 (c1 INT PRIMARY KEY) TABLESPACE ts1 ROW_FORMAT=DYNAMIC;

CREATE TABLE ... TABLESPACE syntax can also be used to create InnoDB tables with a Dynamic row format in the system tablespace, alongside tables with a Compact or Redundant row format.

CREATE TABLE t1 (c1 INT PRIMARY KEY) TABLESPACE = innodb_system ROW_FORMAT=DYNAMIC;

For more information about InnoDB row formats, see Section 14.11, “InnoDB Row Formats”. For how to determine the row format of an InnoDB table and the physical characteristics of InnoDB row formats, see Section 14.11, “InnoDB Row Formats”.

InnoDB Tables and Primary Keys

Always define a primary key for an InnoDB table, specifying the column or columns that:

  • Are referenced by the most important queries.

  • Are never left blank.

  • Never have duplicate values.

  • Rarely if ever change value once inserted.

For example, in a table containing information about people, you would not create a primary key on (firstname, lastname) because more than one person can have the same name, some people have blank last names, and sometimes people change their names. With so many constraints, often there is not an obvious set of columns to use as a primary key, so you create a new column with a numeric ID to serve as all or part of the primary key. You can declare an auto-increment column so that ascending values are filled in automatically as rows are inserted:

# The value of ID can act like a pointer between related items in different tables.
CREATE TABLE t5 (id INT AUTO_INCREMENT, b CHAR (20), PRIMARY KEY (id));

# The primary key can consist of more than one column. Any autoinc column must come first.
CREATE TABLE t6 (id INT AUTO_INCREMENT, a INT, b CHAR (20), PRIMARY KEY (id,a));

Although the table works correctly without defining a primary key, the primary key is involved with many aspects of performance and is a crucial design aspect for any large or frequently used table. It is recommended that you always specify a primary key in the CREATE TABLE statement. If you create the table, load data, and then run ALTER TABLE to add a primary key later, that operation is much slower than defining the primary key when creating the table.

Viewing InnoDB Table Properties

To view the properties of an InnoDB table, issue a SHOW TABLE STATUS statement:

mysql> SHOW TABLE STATUS FROM test LIKE 't%' \G;
*************************** 1. row ***************************
           Name: t1
         Engine: InnoDB
        Version: 10
     Row_format: Compact
           Rows: 0
 Avg_row_length: 0
    Data_length: 16384
Max_data_length: 0
   Index_length: 0
      Data_free: 0
 Auto_increment: NULL
    Create_time: 2015-03-16 15:13:31
    Update_time: NULL
     Check_time: NULL
      Collation: latin1_swedish_ci
       Checksum: NULL
 Create_options:
        Comment:
1 row in set (0.00 sec)

For information about SHOW TABLE STATUS output, see Section 13.7.5.36, “SHOW TABLE STATUS Statement”.

InnoDB table properties may also be queried using the InnoDB Information Schema system tables:

mysql> SELECT * FROM INFORMATION_SCHEMA.INNODB_SYS_TABLES WHERE NAME='test/t1' \G
*************************** 1. row ***************************
     TABLE_ID: 45
         NAME: test/t1
         FLAG: 1
       N_COLS: 5
        SPACE: 35
  FILE_FORMAT: Antelope
   ROW_FORMAT: Compact
ZIP_PAGE_SIZE: 0
   SPACE_TYPE: Single
1 row in set (0.00 sec)

For more information, see Section 14.16.3, “InnoDB INFORMATION_SCHEMA System Tables”.

14.6.1.2 Creating Tables Externally

There are different reasons for creating InnoDB tables externally; that is, creating tables outside of the data directory. Those reasons might include space management, I/O optimization, or placing tables on a storage device with particular performance or capacity characteristics, for example.

InnoDB supports the following methods for creating tables externally:

Using the DATA DIRECTORY Clause

You can create an InnoDB table in an external directory by specifying a DATA DIRECTORY clause in the CREATE TABLE statement.

CREATE TABLE t1 (c1 INT PRIMARY KEY) DATA DIRECTORY = '/external/directory';

The DATA DIRECTORY clause is supported for tables created in file-per-table tablespaces. Tables are implicitly created in file-per-table tablespaces when the innodb_file_per_table variable is enabled, which it is by default.

mysql> SELECT @@innodb_file_per_table;
+-------------------------+
| @@innodb_file_per_table |
+-------------------------+
|                       1 |
+-------------------------+ 

For more information about file-per-table tablespaces, see Section 14.6.3.2, “File-Per-Table Tablespaces”.

Be sure of the directory location you choose, as the DATA DIRECTORY clause cannot be used with ALTER TABLE to change the location later.

When you specify a DATA DIRECTORY clause in a CREATE TABLE statement, the table's data file (table_name.ibd) is created in a schema directory under the specified directory, and an .isl file (table_name.isl) that contains the data file path is created in the schema directory under the MySQL data directory. An .isl file is similar in function to a symbolic link. (Actual symbolic links are not supported for use with InnoDB data files.)

The following example demonstrates creating a table in an external directory using the DATA DIRECTORY clause. It is assumed that the innodb_file_per_table variable is enabled.

mysql> USE test;
Database changed

mysql> CREATE TABLE t1 (c1 INT PRIMARY KEY) DATA DIRECTORY = '/external/directory';

# MySQL creates the table's data file in a schema directory 
# under the external directory

shell> cd /external/directory/test
shell> ls
t1.ibd

# An .isl file that contains the data file path is created
# in the schema directory under the MySQL data directory

shell> cd /path/to/mysql/data/test
shell> ls
db.opt  t1.frm  t1.isl
Usage Notes:
  • MySQL initially holds the tablespace data file open, preventing you from dismounting the device, but might eventually close the file if the server is busy. Be careful not to accidentally dismount an external device while MySQL is running, or start MySQL while the device is disconnected. Attempting to access a table when the associated data file is missing causes a serious error that requires a server restart.

    A server restart might fail if the data file is not found at the expected path. In this case, manually remove the .isl file from the schema directory. After restarting, drop the table to remove the .frm file and the information about the table from the data dictionary.

  • Before placing a table on an NFS-mounted volume, review potential issues outlined in Using NFS with MySQL.

  • If using an LVM snapshot, file copy, or other file-based mechanism to back up the table's data file, always use the FLUSH TABLES ... FOR EXPORT statement first to ensure that all changes buffered in memory are flushed to disk before the backup occurs.

  • Using the DATA DIRECTORY clause to create a table in an external directory is an alternative to using symbolic links, which InnoDB does not support.

Using CREATE TABLE ... TABLESPACE Syntax

CREATE TABLE ... TABLESPACE syntax can be used in combination with the DATA DIRECTORY clause to create a table in an external directory. To do so, specify innodb_file_per_table as the tablespace name.

mysql> CREATE TABLE t2 (c1 INT PRIMARY KEY) TABLESPACE = innodb_file_per_table
       DATA DIRECTORY = '/external/directory';

This method is supported only for tables created in file-per-table tablespaces, but does not require the innodb_file_per_table variable to be enabled. In all other respects, this method is equivalent to the CREATE TABLE ... DATA DIRECTORY method described above. The same usage notes apply.

Creating a Table in an External General Tablespace

You can create a table in a general tablespace that resides in an external directory.

14.6.1.3 Importing InnoDB Tables

This section describes how to import tables using the Transportable Tablespaces feature, which permits importing tables, partitioned tables, or individual table partitions that reside in file-per-table tablespaces. There are many reasons why you might want to import tables:

  • To run reports on a non-production MySQL server instance to avoid placing extra load on a production server.

  • To copy data to a new slave server.

  • To restore a table from a backed-up tablespace file.

  • As a faster way of moving data than importing a dump file, which requires reinserting data and rebuilding indexes.

  • To move a data to a server with storage media that is better suited to your storage requirements. For example, you might move busy tables to an SSD device, or move large tables to a high-capacity HDD device.

The Transportable Tablespaces feature is described under the following topics in this section:

Prerequisites
  • The innodb_file_per_table variable must be enabled, which it is by default.

  • The page size of the tablespace must match the page size of the destination MySQL server instance. InnoDB page size is defined by the innodb_page_size variable, which is configured when initializing a MySQL server instance.

  • If the table is in a foreign key relationship, foreign_key_checks must be disabled before executing DISCARD TABLESPACE. Also, you should export all foreign key related tables at the same logical point in time, as ALTER TABLE ... IMPORT TABLESPACE does not enforce foreign key constraints on imported data. To do so, stop updating the related tables, commit all transactions, acquire shared locks on the tables, and perform the export operations.

  • When importing a table from another MySQL server instance, both MySQL server instances must have General Availability (GA) status and must be the same version. Otherwise, the table must be created on the same MySQL server instance into which it is being imported.

  • If the table was created in an external directory by specifying the DATA DIRECTORY clause in the CREATE TABLE statement, the table that you replace on the destination instance must be defined with the same DATA DIRECTORY clause. A schema mismatch error is reported if the clauses do not match. To determine if the source table was defined with a DATA DIRECTORY clause, use SHOW CREATE TABLE to view the table definition. For information about using the DATA DIRECTORY clause, see Section 14.6.1.2, “Creating Tables Externally”.

  • If a ROW_FORMAT option is not defined explicitly in the table definition or ROW_FORMAT=DEFAULT is used, the innodb_default_row_format setting must be the same on the source and destination instances. Otherwise, a schema mismatch error will be reported when you attempt the import operation. Use SHOW CREATE TABLE to check the table definition. Use SHOW VARIABLES to check the innodb_default_row_format setting. For related information, see Defining the Row Format of a Table.

Importing Tables

This example demonstrates how to import a regular non-partitioned table that resides in a file-per-table tablespace.

  1. On the destination instance, create a table with the same definition as the table you intend to import. (You can obtain the table definition using SHOW CREATE TABLE syntax.) If the table definition does not match, a schema mismatch error will be reported when you attempt the import operation.

    mysql> USE test;
    mysql> CREATE TABLE t1 (c1 INT) ENGINE=INNODB;
  2. On the destination instance, discard the tablespace of the table that you just created. (Before importing, you must discard the tablespace of the receiving table.)

    mysql> ALTER TABLE t1 DISCARD TABLESPACE;
  3. On the source instance, run FLUSH TABLES ... FOR EXPORT to quiesce the table you intend to import. When a table is quiesced, only read-only transactions are permitted on the table.

    mysql> USE test;
    mysql> FLUSH TABLES t1 FOR EXPORT;

    FLUSH TABLES ... FOR EXPORT ensures that changes to the named table have been flushed to disk so that a binary table copy can be made while the server is running. When FLUSH TABLES ... FOR EXPORT is run, InnoDB generates a .cfg metadata file in the schema directory of the table. The .cfg file contains metadata that is used for schema verification during the import operation.

  4. Copy the .ibd file and .cfg metadata file from the source instance to the destination instance. For example:

    shell> scp /path/to/datadir/test/t1.{ibd,cfg} destination-server:/path/to/datadir/test
    

    The .ibd file and .cfg file must be copied before releasing the shared locks, as described in the next step.

    Note

    If you are importing a table from an encrypted tablespace, InnoDB generates a .cfp file in addition to a .cfg metadata file. The .cfp file must be copied to the destination instance together with the .cfg file. The .cfp file contains a transfer key and an encrypted tablespace key. On import, InnoDB uses the transfer key to decrypt the tablespace key. For related information, see Section 14.14, “InnoDB Data-at-Rest Encryption”.

  5. On the source instance, use UNLOCK TABLES to release the locks acquired by the FLUSH TABLES ... FOR EXPORT statement:

    mysql> USE test;
    mysql> UNLOCK TABLES;
  6. On the destination instance, import the tablespace:

    mysql> USE test;
    mysql> ALTER TABLE t1 IMPORT TABLESPACE;
Importing Partitioned Tables

This example demonstrates how to import a partitioned table, where each table partition resides in a file-per-table tablespace.

  1. On the destination instance, create a partitioned table with the same definition as the partitioned table that you want to import. (You can obtain the table definition using SHOW CREATE TABLE syntax.) If the table definition does not match, a schema mismatch error will be reported when you attempt the import operation.

    mysql> USE test;
    mysql> CREATE TABLE t1 (i int) ENGINE = InnoDB PARTITION BY KEY (i) PARTITIONS 3;
    

    In the /datadir/test directory, there is a tablespace .ibd file for each of the three partitions.

    mysql> \! ls /path/to/datadir/test/
    db.opt  t1.frm  t1#P#p0.ibd  t1#P#p1.ibd  t1#P#p2.ibd
    
  2. On the destination instance, discard the tablespace for the partitioned table. (Before the import operation, you must discard the tablespace of the receiving table.)

    mysql> ALTER TABLE t1 DISCARD TABLESPACE;
    

    The three tablespace .ibd files of the partitioned table are discarded from the /datadir/test directory, leaving the following files:

    mysql> \! ls /path/to/datadir/test/
    db.opt  t1.frm
    
  3. On the source instance, run FLUSH TABLES ... FOR EXPORT to quiesce the partitioned table that you intend to import. When a table is quiesced, only read-only transactions are permitted on the table.

    mysql> USE test;
    mysql> FLUSH TABLES t1 FOR EXPORT;
    

    FLUSH TABLES ... FOR EXPORT ensures that changes to the named table are flushed to disk so that binary table copy can be made while the server is running. When FLUSH TABLES ... FOR EXPORT is run, InnoDB generates .cfg metadata files in the schema directory of the table for each of the table's tablespace files.

    mysql> \! ls /path/to/datadir/test/
    db.opt t1#P#p0.ibd  t1#P#p1.ibd  t1#P#p2.ibd
    t1.frm  t1#P#p0.cfg  t1#P#p1.cfg  t1#P#p2.cfg
    

    The .cfg files contain metadata that is used for schema verification when importing the tablespace. FLUSH TABLES ... FOR EXPORT can only be run on the table, not on individual table partitions.

  4. Copy the .ibd and .cfg files from the source instance schema directory to the destination instance schema directory. For example:

    shell>scp /path/to/datadir/test/t1*.{ibd,cfg} destination-server:/path/to/datadir/test
    

    The .ibd and .cfg files must be copied before releasing the shared locks, as described in the next step.

    Note

    If you are importing a table from an encrypted tablespace, InnoDB generates a .cfp files in addition to a .cfg metadata files. The .cfp files must be copied to the destination instance together with the .cfg files. The .cfp files contain a transfer key and an encrypted tablespace key. On import, InnoDB uses the transfer key to decrypt the tablespace key. For related information, see Section 14.14, “InnoDB Data-at-Rest Encryption”.

  5. On the source instance, use UNLOCK TABLES to release the locks acquired by FLUSH TABLES ... FOR EXPORT:

    mysql> USE test;
    mysql> UNLOCK TABLES;
    
  6. On the destination instance, import the tablespace of the partitioned table:

    mysql> USE test;
    mysql> ALTER TABLE t1 IMPORT TABLESPACE;
    
Importing Table Partitions

This example demonstrates how to import individual table partitions, where each partition resides in a file-per-table tablespace file.

In the following example, two partitions (p2 and p3) of a four-partition table are imported.

  1. On the destination instance, create a partitioned table with the same definition as the partitioned table that you want to import partitions from. (You can obtain the table definition using SHOW CREATE TABLE syntax.) If the table definition does not match, a schema mismatch error will be reported when you attempt the import operation.

    mysql> USE test;
    mysql> CREATE TABLE t1 (i int) ENGINE = InnoDB PARTITION BY KEY (i) PARTITIONS 4;
    

    In the /datadir/test directory, there is a tablespace .ibd file for each of the four partitions.

    mysql> \! ls /path/to/datadir/test/
    db.opt  t1.frm  t1#P#p0.ibd  t1#P#p1.ibd  t1#P#p2.ibd t1#P#p3.ibd
    
  2. On the destination instance, discard the partitions that you intend to import from the source instance. (Before importing partitions, you must discard the corresponding partitions from the receiving partitioned table.)

    mysql> ALTER TABLE t1 DISCARD PARTITION p2, p3 TABLESPACE;
    

    The tablespace .ibd files for the two discarded partitions are removed from the /datadir/test directory on the destination instance, leaving the following files:

    mysql> \! ls /path/to/datadir/test/
    db.opt  t1.frm  t1#P#p0.ibd  t1#P#p1.ibd
    
    Note

    When ALTER TABLE ... DISCARD PARTITION ... TABLESPACE is run on subpartitioned tables, both partition and subpartition table names are permitted. When a partition name is specified, subpartitions of that partition are included in the operation.

  3. On the source instance, run FLUSH TABLES ... FOR EXPORT to quiesce the partitioned table. When a table is quiesced, only read-only transactions are permitted on the table.

    mysql> USE test;
    mysql> FLUSH TABLES t1 FOR EXPORT;
    

    FLUSH TABLES ... FOR EXPORT ensures that changes to the named table are flushed to disk so that binary table copy can be made while the instance is running. When FLUSH TABLES ... FOR EXPORT is run, InnoDB generates a .cfg metadata file for each of the table's tablespace files in the schema directory of the table.

    mysql> \! ls /path/to/datadir/test/
    db.opt  t1#P#p0.ibd  t1#P#p1.ibd  t1#P#p2.ibd t1#P#p3.ibd
    t1.frm  t1#P#p0.cfg  t1#P#p1.cfg  t1#P#p2.cfg t1#P#p3.cfg
    

    The .cfg files contain metadata that used for schema verification during the import operation. FLUSH TABLES ... FOR EXPORT can only be run on the table, not on individual table partitions.

  4. Copy the .ibd and .cfg files for partition p2 and partition p3 from the source instance schema directory to the destination instance schema directory.

    shell> scp t1#P#p2.ibd t1#P#p2.cfg t1#P#p3.ibd t1#P#p3.cfg destination-server:/path/to/datadir/test
    

    The .ibd and .cfg files must be copied before releasing the shared locks, as described in the next step.

    Note

    If you are importing partitions from an encrypted tablespace, InnoDB generates a .cfp files in addition to a .cfg metadata files. The .cfp files must be copied to the destination instance together with the .cfg files. The .cfp files contain a transfer key and an encrypted tablespace key. On import, InnoDB uses the transfer key to decrypt the tablespace key. For related information, see Section 14.14, “InnoDB Data-at-Rest Encryption”.

  5. On the source instance, use UNLOCK TABLES to release the locks acquired by FLUSH TABLES ... FOR EXPORT:

    mysql> USE test;
    mysql> UNLOCK TABLES;
    
  6. On the destination instance, import table partitions p2 and p3:

    mysql> USE test;
    mysql> ALTER TABLE t1 IMPORT PARTITION p2, p3 TABLESPACE;
    
    Note

    When ALTER TABLE ... IMPORT PARTITION ... TABLESPACE is run on subpartitioned tables, both partition and subpartition table names are permitted. When a partition name is specified, subpartitions of that partition are included in the operation.

Limitations
  • The Transportable Tablespaces feature is only supported for tables that reside in file-per-table tablespaces. It is not supported for the tables that reside in the system tablespace or general tablespaces. Tables in shared tablespaces cannot be quiesced.

  • FLUSH TABLES ... FOR EXPORT is not supported on tables with a FULLTEXT index, as full-text search auxiliary tables cannot be flushed. After importing a table with a FULLTEXT index, run OPTIMIZE TABLE to rebuild the FULLTEXT indexes. Alternatively, drop FULLTEXT indexes before the export operation and recreate the indexes after importing the table on the destination instance.

  • Due to a .cfg metadata file limitation, schema mismatches are not reported for partition type or partition definition differences when importing a partitioned table. Column differences are reported.

Usage Notes
  • ALTER TABLE ... IMPORT TABLESPACE does not require a .cfg metadata file to import a table. However, metadata checks are not performed when importing without a .cfg file, and a warning similar to the following is issued:

    Message: InnoDB: IO Read error: (2, No such file or directory) Error opening '.\
    test\t.cfg', will attempt to import without schema verification
    1 row in set (0.00 sec)

    Importing a table without a .cfg metadata file should only be considered if no schema mismatches are expected. The ability to import without a .cfg file could be useful in crash recovery scenarios where metadata is not accessible.

  • On Windows, InnoDB stores database, tablespace, and table names internally in lowercase. To avoid import problems on case-sensitive operating systems such as Linux and Unix, create all databases, tablespaces, and tables using lowercase names. A convenient way to accomplish this is to add lower_case_table_names=1 to the [mysqld] section of your my.cnf or my.ini file before creating databases, tablespaces, or tables:

    [mysqld]
    lower_case_table_names=1
  • When running ALTER TABLE ... DISCARD PARTITION ... TABLESPACE and ALTER TABLE ... IMPORT PARTITION ... TABLESPACE on subpartitioned tables, both partition and subpartition table names are permitted. When a partition name is specified, subpartitions of that partition are included in the operation.

Internals

The following information describes internals and messages written to the error log during a table import procedure.

When ALTER TABLE ... DISCARD TABLESPACE is run on the destination instance:

  • The table is locked in X mode.

  • The tablespace is detached from the table.

When FLUSH TABLES ... FOR EXPORT is run on the source instance:

  • The table being flushed for export is locked in shared mode.

  • The purge coordinator thread is stopped.

  • Dirty pages are synchronized to disk.

  • Table metadata is written to the binary .cfg file.

Expected error log messages for this operation:

[Note] InnoDB: Sync to disk of '"test"."t1"' started.
[Note] InnoDB: Stopping purge
[Note] InnoDB: Writing table metadata to './test/t1.cfg'
[Note] InnoDB: Table '"test"."t1"' flushed to disk

When UNLOCK TABLES is run on the source instance:

  • The binary .cfg file is deleted.

  • The shared lock on the table or tables being imported is released and the purge coordinator thread is restarted.

Expected error log messages for this operation:

[Note] InnoDB: Deleting the meta-data file './test/t1.cfg'
[Note] InnoDB: Resuming purge

When ALTER TABLE ... IMPORT TABLESPACE is run on the destination instance, the import algorithm performs the following operations for each tablespace being imported:

  • Each tablespace page is checked for corruption.

  • The space ID and log sequence numbers (LSNs) on each page are updated.

  • Flags are validated and LSN updated for the header page.

  • Btree pages are updated.

  • The page state is set to dirty so that it is written to disk.

Expected error log messages for this operation:

[Note] InnoDB: Importing tablespace for table 'test/t1' that was exported
from host 'host_name'
[Note] InnoDB: Phase I - Update all pages
[Note] InnoDB: Sync to disk
[Note] InnoDB: Sync to disk - done!
[Note] InnoDB: Phase III - Flush changes to disk
[Note] InnoDB: Phase IV - Flush complete
Note

You may also receive a warning that a tablespace is discarded (if you discarded the tablespace for the destination table) and a message stating that statistics could not be calculated due to a missing .ibd file:

[Warning] InnoDB: Table "test"."t1" tablespace is set as discarded. 
7f34d9a37700 InnoDB: cannot calculate statistics for table 
"test"."t1" because the .ibd file is missing. For help, please refer to
http://dev.mysql.com/doc/refman/5.7/en/innodb-troubleshooting.html

14.6.1.4 Moving or Copying InnoDB Tables

This section describes techniques for moving or copying some or all InnoDB tables to a different server or instance. For example, you might move an entire MySQL instance to a larger, faster server; you might clone an entire MySQL instance to a new replication slave server; you might copy individual tables to another instance to develop and test an application, or to a data warehouse server to produce reports.

On Windows, InnoDB always stores database and table names internally in lowercase. To move databases in a binary format from Unix to Windows or from Windows to Unix, create all databases and tables using lowercase names. A convenient way to accomplish this is to add the following line to the [mysqld] section of your my.cnf or my.ini file before creating any databases or tables:

[mysqld]
lower_case_table_names=1

Techniques for moving or copying InnoDB tables include:

Importing Tables

A table that resides in a file-per-table tablespace can be imported from another MySQL server instance or from a backup using the Transportable Tablespace feature. See Section 14.6.1.3, “Importing InnoDB Tables”.

MySQL Enterprise Backup

The MySQL Enterprise Backup product lets you back up a running MySQL database with minimal disruption to operations while producing a consistent snapshot of the database. When MySQL Enterprise Backup is copying tables, reads and writes can continue. In addition, MySQL Enterprise Backup can create compressed backup files, and back up subsets of tables. In conjunction with the MySQL binary log, you can perform point-in-time recovery. MySQL Enterprise Backup is included as part of the MySQL Enterprise subscription.

For more details about MySQL Enterprise Backup, see Section 29.2, “MySQL Enterprise Backup Overview”.

Copying Data Files (Cold Backup Method)

You can move an InnoDB database simply by copying all the relevant files listed under "Cold Backups" in Section 14.19.1, “InnoDB Backup”.

InnoDB data and log files are binary-compatible on all platforms having the same floating-point number format. If the floating-point formats differ but you have not used FLOAT or DOUBLE data types in your tables, then the procedure is the same: simply copy the relevant files.

When you move or copy file-per-table .ibd files, the database directory name must be the same on the source and destination systems. The table definition stored in the InnoDB shared tablespace includes the database name. The transaction IDs and log sequence numbers stored in the tablespace files also differ between databases.

To move an .ibd file and the associated table from one database to another, use a RENAME TABLE statement:

RENAME TABLE db1.tbl_name TO db2.tbl_name;

If you have a clean backup of an .ibd file, you can restore it to the MySQL installation from which it originated as follows:

  1. The table must not have been dropped or truncated since you copied the .ibd file, because doing so changes the table ID stored inside the tablespace.

  2. Issue this ALTER TABLE statement to delete the current .ibd file:

    ALTER TABLE tbl_name DISCARD TABLESPACE;
    
  3. Copy the backup .ibd file to the proper database directory.

  4. Issue this ALTER TABLE statement to tell InnoDB to use the new .ibd file for the table:

    ALTER TABLE tbl_name IMPORT TABLESPACE;
    
    Note

    The ALTER TABLE ... IMPORT TABLESPACE feature does not enforce foreign key constraints on imported data.

In this context, a clean .ibd file backup is one for which the following requirements are satisfied:

  • There are no uncommitted modifications by transactions in the .ibd file.

  • There are no unmerged insert buffer entries in the .ibd file.

  • Purge has removed all delete-marked index records from the .ibd file.

  • mysqld has flushed all modified pages of the .ibd file from the buffer pool to the file.

You can make a clean backup .ibd file using the following method:

  1. Stop all activity from the mysqld server and commit all transactions.

  2. Wait until SHOW ENGINE INNODB STATUS shows that there are no active transactions in the database, and the main thread status of InnoDB is Waiting for server activity. Then you can make a copy of the .ibd file.

Another method for making a clean copy of an .ibd file is to use the MySQL Enterprise Backup product:

  1. Use MySQL Enterprise Backup to back up the InnoDB installation.

  2. Start a second mysqld server on the backup and let it clean up the .ibd files in the backup.

Restoring from a Logical Backup

You can use a utility such as mysqldump to perform a logical backup, which produces a set of SQL statements that can be executed to reproduce the original database object definitions and table data for transfer to another SQL server. Using this method, it does not matter whether the formats differ or if your tables contain floating-point data.

To improve the performance of this method, disable autocommit when importing data. Perform a commit only after importing an entire table or segment of a table.

14.6.1.5 Converting Tables from MyISAM to InnoDB

If you have MyISAM tables that you want to convert to InnoDB for better reliability and scalability, review the following guidelines and tips before converting.

Adjusting Memory Usage for MyISAM and InnoDB

As you transition away from MyISAM tables, lower the value of the key_buffer_size configuration option to free memory no longer needed for caching results. Increase the value of the innodb_buffer_pool_size configuration option, which performs a similar role of allocating cache memory for InnoDB tables. The InnoDB buffer pool caches both table data and index data, speeding up lookups for queries and keeping query results in memory for reuse. For guidance regarding buffer pool size configuration, see Section 8.12.4.1, “How MySQL Uses Memory”.

On a busy server, run benchmarks with the query cache turned off. The InnoDB buffer pool provides similar benefits, so the query cache might be tying up memory unnecessarily. For information about the query cache, see Section 8.10.3, “The MySQL Query Cache”.

Handling Too-Long Or Too-Short Transactions

Because MyISAM tables do not support transactions, you might not have paid much attention to the autocommit configuration option and the COMMIT and ROLLBACK statements. These keywords are important to allow multiple sessions to read and write InnoDB tables concurrently, providing substantial scalability benefits in write-heavy workloads.

While a transaction is open, the system keeps a snapshot of the data as seen at the beginning of the transaction, which can cause substantial overhead if the system inserts, updates, and deletes millions of rows while a stray transaction keeps running. Thus, take care to avoid transactions that run for too long:

  • If you are using a mysql session for interactive experiments, always COMMIT (to finalize the changes) or ROLLBACK (to undo the changes) when finished. Close down interactive sessions rather than leave them open for long periods, to avoid keeping transactions open for long periods by accident.

  • Make sure that any error handlers in your application also ROLLBACK incomplete changes or COMMIT completed changes.

  • ROLLBACK is a relatively expensive operation, because INSERT, UPDATE, and DELETE operations are written to InnoDB tables prior to the COMMIT, with the expectation that most changes are committed successfully and rollbacks are rare. When experimenting with large volumes of data, avoid making changes to large numbers of rows and then rolling back those changes.

  • When loading large volumes of data with a sequence of INSERT statements, periodically COMMIT the results to avoid having transactions that last for hours. In typical load operations for data warehousing, if something goes wrong, you truncate the table (using TRUNCATE TABLE) and start over from the beginning rather than doing a ROLLBACK.

The preceding tips save memory and disk space that can be wasted during too-long transactions. When transactions are shorter than they should be, the problem is excessive I/O. With each COMMIT, MySQL makes sure each change is safely recorded to disk, which involves some I/O.

  • For most operations on InnoDB tables, you should use the setting autocommit=0. From an efficiency perspective, this avoids unnecessary I/O when you issue large numbers of consecutive INSERT, UPDATE, or DELETE statements. From a safety perspective, this allows you to issue a ROLLBACK statement to recover lost or garbled data if you make a mistake on the mysql command line, or in an exception handler in your application.

  • The time when autocommit=1 is suitable for InnoDB tables is when running a sequence of queries for generating reports or analyzing statistics. In this situation, there is no I/O penalty related to COMMIT or ROLLBACK, and InnoDB can automatically optimize the read-only workload.

  • If you make a series of related changes, finalize all the changes at once with a single COMMIT at the end. For example, if you insert related pieces of information into several tables, do a single COMMIT after making all the changes. Or if you run many consecutive INSERT statements, do a single COMMIT after all the data is loaded; if you are doing millions of INSERT statements, perhaps split up the huge transaction by issuing a COMMIT every ten thousand or hundred thousand records, so the transaction does not grow too large.

  • Remember that even a SELECT statement opens a transaction, so after running some report or debugging queries in an interactive mysql session, either issue a COMMIT or close the mysql session.

Handling Deadlocks

You might see warning messages referring to deadlocks in the MySQL error log, or the output of SHOW ENGINE INNODB STATUS. Despite the scary-sounding name, a deadlock is not a serious issue for InnoDB tables, and often does not require any corrective action. When two transactions start modifying multiple tables, accessing the tables in a different order, they can reach a state where each transaction is waiting for the other and neither can proceed. When deadlock detection is enabled (the default), MySQL immediately detects this condition and cancels (rolls back) the smaller transaction, allowing the other to proceed. If deadlock detection is disabled using the innodb_deadlock_detect configuration option, InnoDB relies on the innodb_lock_wait_timeout setting to roll back transactions in case of a deadlock.

Either way, your applications need error-handling logic to restart a transaction that is forcibly cancelled due to a deadlock. When you re-issue the same SQL statements as before, the original timing issue no longer applies. Either the other transaction has already finished and yours can proceed, or the other transaction is still in progress and your transaction waits until it finishes.

If deadlock warnings occur constantly, you might review the application code to reorder the SQL operations in a consistent way, or to shorten the transactions. You can test with the innodb_print_all_deadlocks option enabled to see all deadlock warnings in the MySQL error log, rather than only the last warning in the SHOW ENGINE INNODB STATUS output.

For more information, see Section 14.7.5, “Deadlocks in InnoDB”.

Planning the Storage Layout

To get the best performance from InnoDB tables, you can adjust a number of parameters related to storage layout.

When you convert MyISAM tables that are large, frequently accessed, and hold vital data, investigate and consider the innodb_file_per_table, innodb_file_format, and innodb_page_size configuration options, and the ROW_FORMAT and KEY_BLOCK_SIZE clauses of the CREATE TABLE statement.

During your initial experiments, the most important setting is innodb_file_per_table. When this setting is enabled, which is the default as of MySQL 5.6.6, new InnoDB tables are implicitly created in file-per-table tablespaces. In contrast with the InnoDB system tablespace, file-per-table tablespaces allow disk space to be reclaimed by the operating system when a table is truncated or dropped. File-per-table tablespaces also support the Barracuda file format and associated features such as table compression, efficient off-page storage for long variable-length columns, and large index prefixes. For more information, see Section 14.6.3.2, “File-Per-Table Tablespaces”.

You can also store InnoDB tables in a shared general tablespace. General tablespaces support the Barracuda file format and can contain multiple tables. For more information, see Section 14.6.3.3, “General Tablespaces”.

Converting an Existing Table

To convert a non-InnoDB table to use InnoDB use ALTER TABLE:

ALTER TABLE table_name ENGINE=InnoDB;
Warning

Do not convert MySQL system tables in the mysql database from MyISAM to InnoDB tables. This is an unsupported operation. If you do this, MySQL does not restart until you restore the old system tables from a backup or regenerate them by reinitializing the data directory (see Section 2.10.1, “Initializing the Data Directory”).

Cloning the Structure of a Table

You might make an InnoDB table that is a clone of a MyISAM table, rather than using ALTER TABLE to perform conversion, to test the old and new table side-by-side before switching.

Create an empty InnoDB table with identical column and index definitions. Use SHOW CREATE TABLE table_name\G to see the full CREATE TABLE statement to use. Change the ENGINE clause to ENGINE=INNODB.

Transferring Existing Data

To transfer a large volume of data into an empty InnoDB table created as shown in the previous section, insert the rows with INSERT INTO innodb_table SELECT * FROM myisam_table ORDER BY primary_key_columns.

You can also create the indexes for the InnoDB table after inserting the data. Historically, creating new secondary indexes was a slow operation for InnoDB, but now you can create the indexes after the data is loaded with relatively little overhead from the index creation step.

If you have UNIQUE constraints on secondary keys, you can speed up a table import by turning off the uniqueness checks temporarily during the import operation:

SET unique_checks=0;... import operation ...
SET unique_checks=1;

For big tables, this saves disk I/O because InnoDB can use its change buffer to write secondary index records as a batch. Be certain that the data contains no duplicate keys. unique_checks permits but does not require storage engines to ignore duplicate keys.

For better control over the insertion process, you can insert big tables in pieces:

INSERT INTO newtable SELECT * FROM oldtable
   WHERE yourkey > something AND yourkey <= somethingelse;

After all records are inserted, you can rename the tables.

During the conversion of big tables, increase the size of the InnoDB buffer pool to reduce disk I/O, to a maximum of 80% of physical memory. You can also increase the size of InnoDB log files.

Storage Requirements

If you intend to make several temporary copies of your data in InnoDB tables during the conversion process, it is recommended that you create the tables in file-per-table tablespaces so that you can reclaim the disk space when you drop the tables. When the innodb_file_per_table configuration option is enabled (the default), newly created InnoDB tables are implicitly created in file-per-table tablespaces.

Whether you convert the MyISAM table directly or create a cloned InnoDB table, make sure that you have sufficient disk space to hold both the old and new tables during the process. InnoDB tables require more disk space than MyISAM tables. If an ALTER TABLE operation runs out of space, it starts a rollback, and that can take hours if it is disk-bound. For inserts, InnoDB uses the insert buffer to merge secondary index records to indexes in batches. That saves a lot of disk I/O. For rollback, no such mechanism is used, and the rollback can take 30 times longer than the insertion.

In the case of a runaway rollback, if you do not have valuable data in your database, it may be advisable to kill the database process rather than wait for millions of disk I/O operations to complete. For the complete procedure, see Section 14.22.2, “Forcing InnoDB Recovery”.

Defining a PRIMARY KEY for Each Table

The PRIMARY KEY clause is a critical factor affecting the performance of MySQL queries and the space usage for tables and indexes. The primary key uniquely identifies a row in a table. Every row in the table must have a primary key value, and no two rows can have the same primary key value.

These are guidelines for the primary key, followed by more detailed explanations.

  • Declare a PRIMARY KEY for each table. Typically, it is the most important column that you refer to in WHERE clauses when looking up a single row.

  • Declare the PRIMARY KEY clause in the original CREATE TABLE statement, rather than adding it later through an ALTER TABLE statement.

  • Choose the column and its data type carefully. Prefer numeric columns over character or string ones.

  • Consider using an auto-increment column if there is not another stable, unique, non-null, numeric column to use.

  • An auto-increment column is also a good choice if there is any doubt whether the value of the primary key column could ever change. Changing the value of a primary key column is an expensive operation, possibly involving rearranging data within the table and within each secondary index.

Consider adding a primary key to any table that does not already have one. Use the smallest practical numeric type based on the maximum projected size of the table. This can make each row slightly more compact, which can yield substantial space savings for large tables. The space savings are multiplied if the table has any secondary indexes, because the primary key value is repeated in each secondary index entry. In addition to reducing data size on disk, a small primary key also lets more data fit into the buffer pool, speeding up all kinds of operations and improving concurrency.

If the table already has a primary key on some longer column, such as a VARCHAR, consider adding a new unsigned AUTO_INCREMENT column and switching the primary key to that, even if that column is not referenced in queries. This design change can produce substantial space savings in the secondary indexes. You can designate the former primary key columns as UNIQUE NOT NULL to enforce the same constraints as the PRIMARY KEY clause, that is, to prevent duplicate or null values across all those columns.

If you spread related information across multiple tables, typically each table uses the same column for its primary key. For example, a personnel database might have several tables, each with a primary key of employee number. A sales database might have some tables with a primary key of customer number, and other tables with a primary key of order number. Because lookups using the primary key are very fast, you can construct efficient join queries for such tables.

If you leave the PRIMARY KEY clause out entirely, MySQL creates an invisible one for you. It is a 6-byte value that might be longer than you need, thus wasting space. Because it is hidden, you cannot refer to it in queries.

Application Performance Considerations

The reliability and scalability features of InnoDB require more disk storage than equivalent MyISAM tables. You might change the column and index definitions slightly, for better space utilization, reduced I/O and memory consumption when processing result sets, and better query optimization plans making efficient use of index lookups.

If you do set up a numeric ID column for the primary key, use that value to cross-reference with related values in any other tables, particularly for join queries. For example, rather than accepting a country name as input and doing queries searching for the same name, do one lookup to determine the country ID, then do other queries (or a single join query) to look up relevant information across several tables. Rather than storing a customer or catalog item number as a string of digits, potentially using up several bytes, convert it to a numeric ID for storing and querying. A 4-byte unsigned INT column can index over 4 billion items (with the US meaning of billion: 1000 million). For the ranges of the different integer types, see Section 11.1.2, “Integer Types (Exact Value) - INTEGER, INT, SMALLINT, TINYINT, MEDIUMINT, BIGINT”.

Understanding Files Associated with InnoDB Tables

InnoDB files require more care and planning than MyISAM files do.

14.6.1.6 AUTO_INCREMENT Handling in InnoDB

InnoDB provides a configurable locking mechanism that can significantly improve scalability and performance of SQL statements that add rows to tables with AUTO_INCREMENT columns. To use the AUTO_INCREMENT mechanism with an InnoDB table, an AUTO_INCREMENT column must be defined as part of an index such that it is possible to perform the equivalent of an indexed SELECT MAX(ai_col) lookup on the table to obtain the maximum column value. Typically, this is achieved by making the column the first column of some table index.

This section describes the behavior of AUTO_INCREMENT lock modes, usage implications for different AUTO_INCREMENT lock mode settings, and how InnoDB initializes the AUTO_INCREMENT counter.

InnoDB AUTO_INCREMENT Lock Modes

This section describes the behavior of AUTO_INCREMENT lock modes used to generate auto-increment values, and how each lock mode affects replication. Auto-increment lock modes are configured at startup using the innodb_autoinc_lock_mode configuration parameter.

The following terms are used in describing innodb_autoinc_lock_mode settings:

  • INSERT-like statements

    All statements that generate new rows in a table, including INSERT, INSERT ... SELECT, REPLACE, REPLACE ... SELECT, and LOAD DATA. Includes simple-inserts, bulk-inserts, and mixed-mode inserts.

  • Simple inserts

    Statements for which the number of rows to be inserted can be determined in advance (when the statement is initially processed). This includes single-row and multiple-row INSERT and REPLACE statements that do not have a nested subquery, but not INSERT ... ON DUPLICATE KEY UPDATE.

  • Bulk inserts

    Statements for which the number of rows to be inserted (and the number of required auto-increment values) is not known in advance. This includes INSERT ... SELECT, REPLACE ... SELECT, and LOAD DATA statements, but not plain INSERT. InnoDB assigns new values for the AUTO_INCREMENT column one at a time as each row is processed.

  • Mixed-mode inserts

    These are simple insert statements that specify the auto-increment value for some (but not all) of the new rows. An example follows, where c1 is an AUTO_INCREMENT column of table t1:

    INSERT INTO t1 (c1,c2) VALUES (1,'a'), (NULL,'b'), (5,'c'), (NULL,'d');

    Another type of mixed-mode insert is INSERT ... ON DUPLICATE KEY UPDATE, which in the worst case is in effect an INSERT followed by a UPDATE, where the allocated value for the AUTO_INCREMENT column may or may not be used during the update phase.

There are three possible settings for the innodb_autoinc_lock_mode configuration parameter. The settings are 0, 1, or 2, for traditional, consecutive, or interleaved lock mode, respectively.

  • innodb_autoinc_lock_mode = 0 (traditional lock mode)

    The traditional lock mode provides the same behavior that existed before the innodb_autoinc_lock_mode configuration parameter was introduced in MySQL 5.1. The traditional lock mode option is provided for backward compatibility, performance testing, and working around issues with “mixed-mode inserts”, due to possible differences in semantics.

    In this lock mode, all INSERT-like statements obtain a special table-level AUTO-INC lock for inserts into tables with AUTO_INCREMENT columns. This lock is normally held to the end of the statement (not to the end of the transaction) to ensure that auto-increment values are assigned in a predictable and repeatable order for a given sequence of INSERT statements, and to ensure that auto-increment values assigned by any given statement are consecutive.

    In the case of statement-based replication, this means that when an SQL statement is replicated on a slave server, the same values are used for the auto-increment column as on the master server. The result of execution of multiple INSERT statements is deterministic, and the slave reproduces the same data as on the master. If auto-increment values generated by multiple INSERT statements were interleaved, the result of two concurrent INSERT statements would be nondeterministic, and could not reliably be propagated to a slave server using statement-based replication.

    To make this clear, consider an example that uses this table:

    CREATE TABLE t1 (
      c1 INT(11) NOT NULL AUTO_INCREMENT,
      c2 VARCHAR(10) DEFAULT NULL,
      PRIMARY KEY (c1)
    ) ENGINE=InnoDB;

    Suppose that there are two transactions running, each inserting rows into a table with an AUTO_INCREMENT column. One transaction is using an INSERT ... SELECT statement that inserts 1000 rows, and another is using a simple INSERT statement that inserts one row:

    Tx1: INSERT INTO t1 (c2) SELECT 1000 rows from another table ...
    Tx2: INSERT INTO t1 (c2) VALUES ('xxx');

    InnoDB cannot tell in advance how many rows are retrieved from the SELECT in the INSERT statement in Tx1, and it assigns the auto-increment values one at a time as the statement proceeds. With a table-level lock, held to the end of the statement, only one INSERT statement referring to table t1 can execute at a time, and the generation of auto-increment numbers by different statements is not interleaved. The auto-increment value generated by the Tx1 INSERT ... SELECT statement is consecutive, and the (single) auto-increment value used by the INSERT statement in Tx2 is either be smaller or larger than all those used for Tx1, depending on which statement executes first.

    As long as the SQL statements execute in the same order when replayed from the binary log (when using statement-based replication, or in recovery scenarios), the results are the same as they were when Tx1 and Tx2 first ran. Thus, table-level locks held until the end of a statement make INSERT statements using auto-increment safe for use with statement-based replication. However, those table-level locks limit concurrency and scalability when multiple transactions are executing insert statements at the same time.

    In the preceding example, if there were no table-level lock, the value of the auto-increment column used for the INSERT in Tx2 depends on precisely when the statement executes. If the INSERT of Tx2 executes while the INSERT of Tx1 is running (rather than before it starts or after it completes), the specific auto-increment values assigned by the two INSERT statements are nondeterministic, and may vary from run to run.

    Under the consecutive lock mode, InnoDB can avoid using table-level AUTO-INC locks for simple insert statements where the number of rows is known in advance, and still preserve deterministic execution and safety for statement-based replication.

    If you are not using the binary log to replay SQL statements as part of recovery or replication, the interleaved lock mode can be used to eliminate all use of table-level AUTO-INC locks for even greater concurrency and performance, at the cost of permitting gaps in auto-increment numbers assigned by a statement and potentially having the numbers assigned by concurrently executing statements interleaved.

  • innodb_autoinc_lock_mode = 1 (consecutive lock mode)

    This is the default lock mode. In this mode, bulk inserts use the special AUTO-INC table-level lock and hold it until the end of the statement. This applies to all INSERT ... SELECT, REPLACE ... SELECT, and LOAD DATA statements. Only one statement holding the AUTO-INC lock can execute at a time. If the source table of the bulk insert operation is different from the target table, the AUTO-INC lock on the target table is taken after a shared lock is taken on the first row selected from the source table. If the source and target of the bulk insert operation are the same table, the AUTO-INC lock is taken after shared locks are taken on all selected rows.

    Simple inserts (for which the number of rows to be inserted is known in advance) avoid table-level AUTO-INC locks by obtaining the required number of auto-increment values under the control of a mutex (a light-weight lock) that is only held for the duration of the allocation process, not until the statement completes. No table-level AUTO-INC lock is used unless an AUTO-INC lock is held by another transaction. If another transaction holds an AUTO-INC lock, a simple insert waits for the AUTO-INC lock, as if it were a bulk insert.

    This lock mode ensures that, in the presence of INSERT statements where the number of rows is not known in advance (and where auto-increment numbers are assigned as the statement progresses), all auto-increment values assigned by any INSERT-like statement are consecutive, and operations are safe for statement-based replication.

    Simply put, this lock mode significantly improves scalability while being safe for use with statement-based replication. Further, as with traditional lock mode, auto-increment numbers assigned by any given statement are consecutive. There is no change in semantics compared to traditional mode for any statement that uses auto-increment, with one important exception.

    The exception is for mixed-mode inserts, where the user provides explicit values for an AUTO_INCREMENT column for some, but not all, rows in a multiple-row simple insert. For such inserts, InnoDB allocates more auto-increment values than the number of rows to be inserted. However, all values automatically assigned are consecutively generated (and thus higher than) the auto-increment value generated by the most recently executed previous statement. Excess numbers are lost.

  • innodb_autoinc_lock_mode = 2 (interleaved lock mode)

    In this lock mode, no INSERT-like statements use the table-level AUTO-INC lock, and multiple statements can execute at the same time. This is the fastest and most scalable lock mode, but it is not safe when using statement-based replication or recovery scenarios when SQL statements are replayed from the binary log.

    In this lock mode, auto-increment values are guaranteed to be unique and monotonically increasing across all concurrently executing INSERT-like statements. However, because multiple statements can be generating numbers at the same time (that is, allocation of numbers is interleaved across statements), the values generated for the rows inserted by any given statement may not be consecutive.

    If the only statements executing are simple inserts where the number of rows to be inserted is known ahead of time, there are no gaps in the numbers generated for a single statement, except for mixed-mode inserts. However, when bulk inserts are executed, there may be gaps in the auto-increment values assigned by any given statement.

InnoDB AUTO_INCREMENT Lock Mode Usage Implications
  • Using auto-increment with replication

    If you are using statement-based replication, set innodb_autoinc_lock_mode to 0 or 1 and use the same value on the master and its slaves. Auto-increment values are not ensured to be the same on the slaves as on the master if you use innodb_autoinc_lock_mode = 2 (interleaved) or configurations where the master and slaves do not use the same lock mode.

    If you are using row-based or mixed-format replication, all of the auto-increment lock modes are safe, since row-based replication is not sensitive to the order of execution of the SQL statements (and the mixed format uses row-based replication for any statements that are unsafe for statement-based replication).

  • Lost auto-increment values and sequence gaps

    In all lock modes (0, 1, and 2), if a transaction that generated auto-increment values rolls back, those auto-increment values are lost. Once a value is generated for an auto-increment column, it cannot be rolled back, whether or not the INSERT-like statement is completed, and whether or not the containing transaction is rolled back. Such lost values are not reused. Thus, there may be gaps in the values stored in an AUTO_INCREMENT column of a table.

  • Specifying NULL or 0 for the AUTO_INCREMENT column

    In all lock modes (0, 1, and 2), if a user specifies NULL or 0 for the AUTO_INCREMENT column in an INSERT, InnoDB treats the row as if the value was not specified and generates a new value for it.

  • Assigning a negative value to the AUTO_INCREMENT column

    In all lock modes (0, 1, and 2), the behavior of the auto-increment mechanism is not defined if you assign a negative value to the AUTO_INCREMENT column.

  • If the AUTO_INCREMENT value becomes larger than the maximum integer for the specified integer type

    In all lock modes (0, 1, and 2), the behavior of the auto-increment mechanism is not defined if the value becomes larger than the maximum integer that can be stored in the specified integer type.

  • Gaps in auto-increment values for bulk inserts

    With innodb_autoinc_lock_mode set to 0 (traditional) or 1 (consecutive), the auto-increment values generated by any given statement are consecutive, without gaps, because the table-level AUTO-INC lock is held until the end of the statement, and only one such statement can execute at a time.

    With innodb_autoinc_lock_mode set to 2 (interleaved), there may be gaps in the auto-increment values generated by bulk inserts, but only if there are concurrently executing INSERT-like statements.

    For lock modes 1 or 2, gaps may occur between successive statements because for bulk inserts the exact number of auto-increment values required by each statement may not be known and overestimation is possible.

  • Auto-increment values assigned by mixed-mode inserts

    Consider a mixed-mode insert, where a simple insert specifies the auto-increment value for some (but not all) resulting rows. Such a statement behaves differently in lock modes 0, 1, and 2. For example, assume c1 is an AUTO_INCREMENT column of table t1, and that the most recent automatically generated sequence number is 100.

    mysql> CREATE TABLE t1 (
        -> c1 INT UNSIGNED NOT NULL AUTO_INCREMENT PRIMARY KEY, 
        -> c2 CHAR(1)
        -> ) ENGINE = INNODB;
    

    Now, consider the following mixed-mode insert statement:

    mysql> INSERT INTO t1 (c1,c2) VALUES (1,'a'), (NULL,'b'), (5,'c'), (NULL,'d');
    

    With innodb_autoinc_lock_mode set to 0 (traditional), the four new rows are:

    mysql> SELECT c1, c2 FROM t1 ORDER BY c2;
    +-----+------+
    | c1  | c2   |
    +-----+------+
    |   1 | a    |
    | 101 | b    |
    |   5 | c    |
    | 102 | d    |
    +-----+------+
    

    The next available auto-increment value is 103 because the auto-increment values are allocated one at a time, not all at once at the beginning of statement execution. This result is true whether or not there are concurrently executing INSERT-like statements (of any type).

    With innodb_autoinc_lock_mode set to 1 (consecutive), the four new rows are also:

    mysql> SELECT c1, c2 FROM t1 ORDER BY c2;
    +-----+------+
    | c1  | c2   |
    +-----+------+
    |   1 | a    |
    | 101 | b    |
    |   5 | c    |
    | 102 | d    |
    +-----+------+
    

    However, in this case, the next available auto-increment value is 105, not 103 because four auto-increment values are allocated at the time the statement is processed, but only two are used. This result is true whether or not there are concurrently executing INSERT-like statements (of any type).

    With innodb_autoinc_lock_mode set to mode 2 (interleaved), the four new rows are:

    mysql> SELECT c1, c2 FROM t1 ORDER BY c2;
    +-----+------+
    | c1  | c2   |
    +-----+------+
    |   1 | a    |
    |   x | b    |
    |   5 | c    |
    |   y | d    |
    +-----+------+
    

    The values of x and y are unique and larger than any previously generated rows. However, the specific values of x and y depend on the number of auto-increment values generated by concurrently executing statements.

    Finally, consider the following statement, issued when the most-recently generated sequence number is 100:

    mysql> INSERT INTO t1 (c1,c2) VALUES (1,'a'), (NULL,'b'), (101,'c'), (NULL,'d');
    

    With any innodb_autoinc_lock_mode setting, this statement generates a duplicate-key error 23000 (Can't write; duplicate key in table) because 101 is allocated for the row (NULL, 'b') and insertion of the row (101, 'c') fails.

  • Modifying AUTO_INCREMENT column values in the middle of a sequence of INSERT statements

    In all lock modes (0, 1, and 2), modifying an AUTO_INCREMENT column value in the middle of a sequence of INSERT statements could lead to Duplicate entry errors. For example, if you perform an UPDATE operation that changes an AUTO_INCREMENT column value to a value larger than the current maximum auto-increment value, subsequent INSERT operations that do not specify an unused auto-increment value could encounter Duplicate entry errors. This behavior is demonstrated in the following example.

    mysql> CREATE TABLE t1 (
        -> c1 INT NOT NULL AUTO_INCREMENT,
        -> PRIMARY KEY (c1)
        ->  ) ENGINE = InnoDB;
    
    mysql> INSERT INTO t1 VALUES(0), (0), (3);
    
    mysql> SELECT c1 FROM t1;
    +----+
    | c1 |
    +----+
    |  1 |
    |  2 |
    |  3 |
    +----+
    
    mysql> UPDATE t1 SET c1 = 4 WHERE c1 = 1;
    
    mysql> SELECT c1 FROM t1;
    +----+
    | c1 |
    +----+
    |  2 |
    |  3 |
    |  4 |
    +----+
    
    mysql> INSERT INTO t1 VALUES(0);
    ERROR 1062 (23000): Duplicate entry '4' for key 'PRIMARY'
    
InnoDB AUTO_INCREMENT Counter Initialization

This section describes how InnoDB initializes AUTO_INCREMENT counters.

If you specify an AUTO_INCREMENT column for an InnoDB table, the table handle in the InnoDB data dictionary contains a special counter called the auto-increment counter that is used in assigning new values for the column. This counter is stored only in main memory, not on disk.

To initialize an auto-increment counter after a server restart, InnoDB executes the equivalent of the following statement on the first insert into a table containing an AUTO_INCREMENT column.

SELECT MAX(ai_col) FROM table_name FOR UPDATE;

InnoDB increments the value retrieved by the statement and assigns it to the column and to the auto-increment counter for the table. By default, the value is incremented by 1. This default can be overridden by the auto_increment_increment configuration setting.

If the table is empty, InnoDB uses the value 1. This default can be overridden by the auto_increment_offset configuration setting.

If a SHOW TABLE STATUS statement examines the table before the auto-increment counter is initialized, InnoDB initializes but does not increment the value. The value is stored for use by later inserts. This initialization uses a normal exclusive-locking read on the table and the lock lasts to the end of the transaction. InnoDB follows the same procedure for initializing the auto-increment counter for a newly created table.

After the auto-increment counter has been initialized, if you do not explicitly specify a value for an AUTO_INCREMENT column, InnoDB increments the counter and assigns the new value to the column. If you insert a row that explicitly specifies the column value, and the value is greater than the current counter value, the counter is set to the specified column value.

InnoDB uses the in-memory auto-increment counter as long as the server runs. When the server is stopped and restarted, InnoDB reinitializes the counter for each table for the first INSERT to the table, as described earlier.

A server restart also cancels the effect of the AUTO_INCREMENT = N table option in CREATE TABLE and ALTER TABLE statements, which you can use with InnoDB tables to set the initial counter value or alter the current counter value.

Notes
  • When an AUTO_INCREMENT integer column runs out of values, a subsequent INSERT operation returns a duplicate-key error. This is general MySQL behavior.

  • When you restart the MySQL server, InnoDB may reuse an old value that was generated for an AUTO_INCREMENT column but never stored (that is, a value that was generated during an old transaction that was rolled back).

14.6.2 Indexes

This section covers topics related to InnoDB indexes.

14.6.2.1 Clustered and Secondary Indexes

Every InnoDB table has a special index called the clustered index where the data for the rows is stored. Typically, the clustered index is synonymous with the primary key. To get the best performance from queries, inserts, and other database operations, you must understand how InnoDB uses the clustered index to optimize the most common lookup and DML operations for each table.

  • When you define a PRIMARY KEY on your table, InnoDB uses it as the clustered index. Define a primary key for each table that you create. If there is no logical unique and non-null column or set of columns, add a new auto-increment column, whose values are filled in automatically.

  • If you do not define a PRIMARY KEY for your table, MySQL locates the first UNIQUE index where all the key columns are NOT NULL and InnoDB uses it as the clustered index.

  • If the table has no PRIMARY KEY or suitable UNIQUE index, InnoDB internally generates a hidden clustered index named GEN_CLUST_INDEX on a synthetic column containing row ID values. The rows are ordered by the ID that InnoDB assigns to the rows in such a table. The row ID is a 6-byte field that increases monotonically as new rows are inserted. Thus, the rows ordered by the row ID are physically in insertion order.

How the Clustered Index Speeds Up Queries

Accessing a row through the clustered index is fast because the index search leads directly to the page with all the row data. If a table is large, the clustered index architecture often saves a disk I/O operation when compared to storage organizations that store row data using a different page from the index record.

How Secondary Indexes Relate to the Clustered Index

All indexes other than the clustered index are known as secondary indexes. In InnoDB, each record in a secondary index contains the primary key columns for the row, as well as the columns specified for the secondary index. InnoDB uses this primary key value to search for the row in the clustered index.

If the primary key is long, the secondary indexes use more space, so it is advantageous to have a short primary key.

For guidelines to take advantage of InnoDB clustered and secondary indexes, see Section 8.3, “Optimization and Indexes”.

14.6.2.2 The Physical Structure of an InnoDB Index

With the exception of spatial indexes, InnoDB indexes are B-tree data structures. Spatial indexes use R-trees, which are specialized data structures for indexing multi-dimensional data. Index records are stored in the leaf pages of their B-tree or R-tree data structure. The default size of an index page is 16KB.

When new records are inserted into an InnoDB clustered index, InnoDB tries to leave 1/16 of the page free for future insertions and updates of the index records. If index records are inserted in a sequential order (ascending or descending), the resulting index pages are about 15/16 full. If records are inserted in a random order, the pages are from 1/2 to 15/16 full.

InnoDB performs a bulk load when creating or rebuilding B-tree indexes. This method of index creation is known as a sorted index build. The innodb_fill_factor configuration option defines the percentage of space on each B-tree page that is filled during a sorted index build, with the remaining space reserved for future index growth. Sorted index builds are not supported for spatial indexes. For more information, see Section 14.6.2.3, “Sorted Index Builds”. An innodb_fill_factor setting of 100 leaves 1/16 of the space in clustered index pages free for future index growth.

If the fill factor of an InnoDB index page drops below the MERGE_THRESHOLD, which is 50% by default if not specified, InnoDB tries to contract the index tree to free the page. The MERGE_THRESHOLD setting applies to both B-tree and R-tree indexes. For more information, see Section 14.8.12, “Configuring the Merge Threshold for Index Pages”.

You can define the page size for all InnoDB tablespaces in a MySQL instance by setting the innodb_page_size configuration option prior to initializing the MySQL instance. Once the page size for an instance is defined, you cannot change it without reinitializing the instance. Supported sizes are 64KB, 32KB, 16KB (default), 8KB, and 4KB.

Support for 32KB and 64KB pages sizes was added in MySQL 5.7. For more information, refer to the innodb_page_size documentation.

A MySQL instance using a particular InnoDB page size cannot use data files or log files from an instance that uses a different page size.

14.6.2.3 Sorted Index Builds

InnoDB performs a bulk load instead of inserting one index record at a time when creating or rebuilding indexes. This method of index creation is also known as a sorted index build. Sorted index builds are not supported for spatial indexes.

There are three phases to an index build. In the first phase, the clustered index is scanned, and index entries are generated and added to the sort buffer. When the sort buffer becomes full, entries are sorted and written out to a temporary intermediate file. This process is also known as a run. In the second phase, with one or more runs written to the temporary intermediate file, a merge sort is performed on all entries in the file. In the third and final phase, the sorted entries are inserted into the B-tree.

Prior to the introduction of sorted index builds, index entries were inserted into the B-tree one record at a time using insert APIs. This method involved opening a B-tree cursor to find the insert position and then inserting entries into a B-tree page using an optimistic insert. If an insert failed due to a page being full, a pessimistic insert would be performed, which involves opening a B-tree cursor and splitting and merging B-tree nodes as necessary to find space for the entry. The drawbacks of this top-down method of building an index are the cost of searching for an insert position and the constant splitting and merging of B-tree nodes.

Sorted index builds use a bottom-up approach to building an index. With this approach, a reference to the right-most leaf page is held at all levels of the B-tree. The right-most leaf page at the necessary B-tree depth is allocated and entries are inserted according to their sorted order. Once a leaf page is full, a node pointer is appended to the parent page and a sibling leaf page is allocated for the next insert. This process continues until all entries are inserted, which may result in inserts up to the root level. When a sibling page is allocated, the reference to the previously pinned leaf page is released, and the newly allocated leaf page becomes the right-most leaf page and new default insert location.

Reserving B-tree Page Space for Future Index Growth

To set aside space for future index growth, you can use the innodb_fill_factor configuration option to reserve a percentage of B-tree page space. For example, setting innodb_fill_factor to 80 reserves 20 percent of the space in B-tree pages during a sorted index build. This setting applies to both B-tree leaf and non-leaf pages. It does not apply to external pages used for TEXT or BLOB entries. The amount of space that is reserved may not be exactly as configured, as the innodb_fill_factor value is interpreted as a hint rather than a hard limit.

Sorted Index Builds and Full-Text Index Support

Sorted index builds are supported for fulltext indexes. Previously, SQL was used to insert entries into a fulltext index.

Sorted Index Builds and Compressed Tables

For compressed tables, the previous index creation method appended entries to both compressed and uncompressed pages. When the modification log (representing free space on the compressed page) became full, the compressed page would be recompressed. If compression failed due to a lack of space, the page would be split. With sorted index builds, entries are only appended to uncompressed pages. When an uncompressed page becomes full, it is compressed. Adaptive padding is used to ensure that compression succeeds in most cases, but if compression fails, the page is split and compression is attempted again. This process continues until compression is successful. For more information about compression of B-Tree pages, see Section 14.9.1.5, “How Compression Works for InnoDB Tables”.

Sorted Index Builds and Redo Logging

Redo logging is disabled during a sorted index build. Instead, there is a checkpoint to ensure that the index build can withstand a crash or failure. The checkpoint forces a write of all dirty pages to disk. During a sorted index build, the page cleaner thread is signaled periodically to flush dirty pages to ensure that the checkpoint operation can be processed quickly. Normally, the page cleaner thread flushes dirty pages when the number of clean pages falls below a set threshold. For sorted index builds, dirty pages are flushed promptly to reduce checkpoint overhead and to parallelize I/O and CPU activity.

Sorted Index Builds and Optimizer Statistics

Sorted index builds may result in optimizer statistics that differ from those generated by the previous method of index creation. The difference in statistics, which is not expected to affect workload performance, is due to the different algorithm used to populate the index.

14.6.2.4 InnoDB FULLTEXT Indexes

FULLTEXT indexes are created on text-based columns (CHAR, VARCHAR, or TEXT columns) to help speed up queries and DML operations on data contained within those columns, omitting any words that are defined as stopwords.

A FULLTEXT index is defined as part of a CREATE TABLE statement or added to an existing table using ALTER TABLE or CREATE INDEX.

Full-text search is performed using MATCH() ... AGAINST syntax. For usage information, see Section 12.9, “Full-Text Search Functions”.

InnoDB FULLTEXT indexes are described under the following topics in this section:

InnoDB Full-Text Index Design

InnoDB FULLTEXT indexes have an inverted index design. Inverted indexes store a list of words, and for each word, a list of documents that the word appears in. To support proximity search, position information for each word is also stored, as a byte offset.

InnoDB Full-Text Index Tables

When creating an InnoDB FULLTEXT index, a set of index tables is created, as shown in the following example:

mysql> CREATE TABLE opening_lines (
       id INT UNSIGNED AUTO_INCREMENT NOT NULL PRIMARY KEY,
       opening_line TEXT(500),
       author VARCHAR(200),
       title VARCHAR(200),
       FULLTEXT idx (opening_line)
       ) ENGINE=InnoDB;

mysql> SELECT table_id, name, space from INFORMATION_SCHEMA.INNODB_SYS_TABLES
       WHERE name LIKE 'test/%';
+----------+----------------------------------------------------+-------+
| table_id | name                                               | space |
+----------+----------------------------------------------------+-------+
|      333 | test/FTS_0000000000000147_00000000000001c9_INDEX_1 |   289 |
|      334 | test/FTS_0000000000000147_00000000000001c9_INDEX_2 |   290 |
|      335 | test/FTS_0000000000000147_00000000000001c9_INDEX_3 |   291 |
|      336 | test/FTS_0000000000000147_00000000000001c9_INDEX_4 |   292 |
|      337 | test/FTS_0000000000000147_00000000000001c9_INDEX_5 |   293 |
|      338 | test/FTS_0000000000000147_00000000000001c9_INDEX_6 |   294 |
|      330 | test/FTS_0000000000000147_BEING_DELETED            |   286 |
|      331 | test/FTS_0000000000000147_BEING_DELETED_CACHE      |   287 |
|      332 | test/FTS_0000000000000147_CONFIG                   |   288 |
|      328 | test/FTS_0000000000000147_DELETED                  |   284 |
|      329 | test/FTS_0000000000000147_DELETED_CACHE            |   285 |
|      327 | test/opening_lines                                 |   283 |
+----------+----------------------------------------------------+-------+ 

The first six tables represent the inverted index and are referred to as auxiliary index tables. When incoming documents are tokenized, the individual words (also referred to as tokens) are inserted into the index tables along with position information and the associated Document ID (DOC_ID). The words are fully sorted and partitioned among the six index tables based on the character set sort weight of the word's first character.

The inverted index is partitioned into six auxiliary index tables to support parallel index creation. By default, two threads tokenize, sort, and insert words and associated data into the index tables. The number of threads is configurable using the innodb_ft_sort_pll_degree option. Consider increasing the number of threads when creating FULLTEXT indexes on large tables.

Auxiliary index table names are prefixed with FTS_ and postfixed with INDEX_*. Each index table is associated with the indexed table by a hex value in the index table name that matches the table_id of the indexed table. For example, the table_id of the test/opening_lines table is 327, for which the hex value is 0x147. As shown in the preceding example, the 147 hex value appears in the names of index tables that are associated with the test/opening_lines table.

A hex value representing the index_id of the FULLTEXT index also appears in auxiliary index table names. For example, in the auxiliary table name test/FTS_0000000000000147_00000000000001c9_INDEX_1, the hex value 1c9 has a decimal value of 457. The index defined on the opening_lines table (idx) can be identified by querying the INFORMATION_SCHEMA.INNODB_SYS_INDEXES table for this value (457).

mysql> SELECT index_id, name, table_id, space from INFORMATION_SCHEMA.INNODB_SYS_INDEXES
       WHERE index_id=457;
+----------+------+----------+-------+
| index_id | name | table_id | space |
+----------+------+----------+-------+
|      457 | idx  |      327 |   283 |
+----------+------+----------+-------+

Index tables are stored in their own tablespace if the primary table is created in a file-per-table tablespace.

The other index tables shown in the preceding example are referred to as common index tables and are used for deletion handling and storing the internal state of FULLTEXT indexes. Unlike the inverted index tables, which are created for each full-text index, this set of tables is common to all full-text indexes created on a particular table.

Common auxiliary tables are retained even if full-text indexes are dropped. When a full-text index is dropped, the FTS_DOC_ID column that was created for the index is retained, as removing the FTS_DOC_ID column would require rebuilding the table. Common axillary tables are required to manage the FTS_DOC_ID column.

  • FTS_*_DELETED and FTS_*_DELETED_CACHE

    Contain the document IDs (DOC_ID) for documents that are deleted but whose data is not yet removed from the full-text index. The FTS_*_DELETED_CACHE is the in-memory version of the FTS_*_DELETED table.

  • FTS_*_BEING_DELETED and FTS_*_BEING_DELETED_CACHE

    Contain the document IDs (DOC_ID) for documents that are deleted and whose data is currently in the process of being removed from the full-text index. The FTS_*_BEING_DELETED_CACHE table is the in-memory version of the FTS_*_BEING_DELETED table.

  • FTS_*_CONFIG

    Stores information about the internal state of the FULLTEXT index. Most importantly, it stores the FTS_SYNCED_DOC_ID, which identifies documents that have been parsed and flushed to disk. In case of crash recovery, FTS_SYNCED_DOC_ID values are used to identify documents that have not been flushed to disk so that the documents can be re-parsed and added back to the FULLTEXT index cache. To view the data in this table, query the INFORMATION_SCHEMA.INNODB_FT_CONFIG table.

InnoDB Full-Text Index Cache

When a document is inserted, it is tokenized, and the individual words and associated data are inserted into the FULLTEXT index. This process, even for small documents, could result in numerous small insertions into the auxiliary index tables, making concurrent access to these tables a point of contention. To avoid this problem, InnoDB uses a FULLTEXT index cache to temporarily cache index table insertions for recently inserted rows. This in-memory cache structure holds insertions until the cache is full and then batch flushes them to disk (to the auxiliary index tables). You can query the INFORMATION_SCHEMA.INNODB_FT_INDEX_CACHE table to view tokenized data for recently inserted rows.

The caching and batch flushing behavior avoids frequent updates to auxiliary index tables, which could result in concurrent access issues during busy insert and update times. The batching technique also avoids multiple insertions for the same word, and minimizes duplicate entries. Instead of flushing each word individually, insertions for the same word are merged and flushed to disk as a single entry, improving insertion efficiency while keeping auxiliary index tables as small as possible.

The innodb_ft_cache_size variable is used to configure the full-text index cache size (on a per-table basis), which affects how often the full-text index cache is flushed. You can also define a global full-text index cache size limit for all tables in a given instance using the innodb_ft_total_cache_size option.

The full-text index cache stores the same information as auxiliary index tables. However, the full-text index cache only caches tokenized data for recently inserted rows. The data that is already flushed to disk (to the full-text auxiliary tables) is not brought back into the full-text index cache when queried. The data in auxiliary index tables is queried directly, and results from the auxiliary index tables are merged with results from the full-text index cache before being returned.

InnoDB Full-Text Index Document ID and FTS_DOC_ID Column

InnoDB uses a unique document identifier referred to as a Document ID (DOC_ID) to map words in the full-text index to document records where the word appears. The mapping requires an FTS_DOC_ID column on the indexed table. If an FTS_DOC_ID column is not defined, InnoDB automatically adds a hidden FTS_DOC_ID column when the full-text index is created. The following example demonstrates this behavior.

The following table definition does not include an FTS_DOC_ID column:

mysql> CREATE TABLE opening_lines (
       id INT UNSIGNED AUTO_INCREMENT NOT NULL PRIMARY KEY,
       opening_line TEXT(500),
       author VARCHAR(200),
       title VARCHAR(200)
       ) ENGINE=InnoDB;   

When you create a full-text index on the table using CREATE FULLTEXT INDEX syntax, a warning is returned which reports that InnoDB is rebuilding the table to add the FTS_DOC_ID column.

mysql> CREATE FULLTEXT INDEX idx ON opening_lines(opening_line);
Query OK, 0 rows affected, 1 warning (0.19 sec)
Records: 0  Duplicates: 0  Warnings: 1

mysql> SHOW WARNINGS;
+---------+------+--------------------------------------------------+
| Level   | Code | Message                                          |
+---------+------+--------------------------------------------------+
| Warning |  124 | InnoDB rebuilding table to add column FTS_DOC_ID |
+---------+------+--------------------------------------------------+

The same warning is returned when using ALTER TABLE to add a full-text index to a table that does not have an FTS_DOC_ID column. If you create a full-text index at CREATE TABLE time and do not specify an FTS_DOC_ID column, InnoDB adds a hidden FTS_DOC_ID column, without warning.

Defining an FTS_DOC_ID column at CREATE TABLE time is less expensive than creating a full-text index on a table that is already loaded with data. If an FTS_DOC_ID column is defined on a table prior to loading data, the table and its indexes do not have to be rebuilt to add the new column. If you are not concerned with CREATE FULLTEXT INDEX performance, leave out the FTS_DOC_ID column to have InnoDB create it for you. InnoDB creates a hidden FTS_DOC_ID column along with a unique index (FTS_DOC_ID_INDEX) on the FTS_DOC_ID column. If you want to create your own FTS_DOC_ID column, the column must be defined as BIGINT UNSIGNED NOT NULL and named FTS_DOC_ID (all uppercase), as in the following example:

Note

The FTS_DOC_ID column does not need to be defined as an AUTO_INCREMENT column, but AUTO_INCREMENT could make loading data easier.

mysql> CREATE TABLE opening_lines (
       FTS_DOC_ID BIGINT UNSIGNED AUTO_INCREMENT NOT NULL PRIMARY KEY,
       opening_line TEXT(500),
       author VARCHAR(200),
       title VARCHAR(200)
       ) ENGINE=InnoDB;    

If you choose to define the FTS_DOC_ID column yourself, you are responsible for managing the column to avoid empty or duplicate values. FTS_DOC_ID values cannot be reused, which means FTS_DOC_ID values must be ever increasing.

Optionally, you can create the required unique FTS_DOC_ID_INDEX (all uppercase) on the FTS_DOC_ID column.

mysql> CREATE UNIQUE INDEX FTS_DOC_ID_INDEX on opening_lines(FTS_DOC_ID);

If you do not create the FTS_DOC_ID_INDEX, InnoDB creates it automatically.

Before MySQL 5.7.13, the permitted gap between the largest used FTS_DOC_ID value and new FTS_DOC_ID value is 10000. In MySQL 5.7.13 and later, the permitted gap is 65535.

To avoid rebuilding the table, the FTS_DOC_ID column is retained when dropping a full-text index.

InnoDB Full-Text Index Deletion Handling

Deleting a record that has a full-text index column could result in numerous small deletions in the auxiliary index tables, making concurrent access to these tables a point of contention. To avoid this problem, the Document ID (DOC_ID) of a deleted document is logged in a special FTS_*_DELETED table whenever a record is deleted from an indexed table, and the indexed record remains in the full-text index. Before returning query results, information in the FTS_*_DELETED table is used to filter out deleted Document IDs. The benefit of this design is that deletions are fast and inexpensive. The drawback is that the size of the index is not immediately reduced after deleting records. To remove full-text index entries for deleted records, run OPTIMIZE TABLE on the indexed table with innodb_optimize_fulltext_only=ON to rebuild the full-text index. For more information, see Optimizing InnoDB Full-Text Indexes.

InnoDB Full-Text Index Transaction Handling

InnoDB FULLTEXT indexes have special transaction handling characteristics due its caching and batch processing behavior. Specifically, updates and insertions on a FULLTEXT index are processed at transaction commit time, which means that a FULLTEXT search can only see committed data. The following example demonstrates this behavior. The FULLTEXT search only returns a result after the inserted lines are committed.

mysql> CREATE TABLE opening_lines (
       id INT UNSIGNED AUTO_INCREMENT NOT NULL PRIMARY KEY,
       opening_line TEXT(500),
       author VARCHAR(200),
       title VARCHAR(200),
       FULLTEXT idx (opening_line)
       ) ENGINE=InnoDB;

mysql> BEGIN;

mysql> INSERT INTO opening_lines(opening_line,author,title) VALUES
       ('Call me Ishmael.','Herman Melville','Moby-Dick'),
       ('A screaming comes across the sky.','Thomas Pynchon','Gravity\'s Rainbow'),
       ('I am an invisible man.','Ralph Ellison','Invisible Man'),
       ('Where now? Who now? When now?','Samuel Beckett','The Unnamable'),
       ('It was love at first sight.','Joseph Heller','Catch-22'),
       ('All this happened, more or less.','Kurt Vonnegut','Slaughterhouse-Five'),
       ('Mrs. Dalloway said she would buy the flowers herself.','Virginia Woolf','Mrs. Dalloway'),
       ('It was a pleasure to burn.','Ray Bradbury','Fahrenheit 451');

mysql> SELECT COUNT(*) FROM opening_lines WHERE MATCH(opening_line) AGAINST('Ishmael');
+----------+
| COUNT(*) |
+----------+
|        0 |
+----------+

mysql> COMMIT;

mysql> SELECT COUNT(*) FROM opening_lines WHERE MATCH(opening_line) AGAINST('Ishmael');
+----------+
| COUNT(*) |
+----------+
|        1 |
+----------+
Monitoring InnoDB Full-Text Indexes

You can monitor and examine the special text-processing aspects of InnoDB FULLTEXT indexes by querying the following INFORMATION_SCHEMA tables:

You can also view basic information for FULLTEXT indexes and tables by querying INNODB_SYS_INDEXES and INNODB_SYS_TABLES.

For more information, see Section 14.16.4, “InnoDB INFORMATION_SCHEMA FULLTEXT Index Tables”.

14.6.3 Tablespaces

This section covers topics related to InnoDB tablespaces.

14.6.3.1 The System Tablespace

The system tablespace is the storage area for the InnoDB data dictionary, the doublewrite buffer, the change buffer, and undo logs. It may also contain table and index data if tables are created in the system tablespace rather than file-per-table or general tablespaces.

The system tablespace can have one or more data files. By default, a single system tablespace data file, named ibdata1, is created in the data directory. The size and number of system tablespace data files is defined by the innodb_data_file_path startup option. For configuration information, see System Tablespace Data File Configuration.

Additional information about the system tablespace is provided under the following topics in the section:

Resizing the System Tablespace

This section describes how to increase or decrease the size of the system tablespace.

Increasing the Size of the System Tablespace

The easiest way to increase the size of the system tablespace is to configure it to be auto-extending. To do so, specify the autoextend attribute for the last data file in the innodb_data_file_path setting, and restart the server. For example:

innodb_data_file_path=ibdata1:10M:autoextend        

When the autoextend attribute is specified, the data file automatically increases in size by 8MB increments as space is required. The innodb_autoextend_increment variable controls the increment size.

You can also increase system tablespace size by adding another data file. To do so:

  1. Stop the MySQL server.

  2. If the last data file in the innodb_data_file_path setting is defined with the autoextend attribute, remove it, and modify the size attribute to reflect the current data file size. To determine the appropriate data file size to specify, check your file system for the file size, and round that value down to the closest MB value, where a MB is equal to 1024 x 1024.

  3. Append a new data file to the innodb_data_file_path setting, optionally specifying the autoextend attribute. The autoextend attribute can be specified only for the last data file in the innodb_data_file_path setting.

  4. Start the MySQL server.

For example, this tablespace has one auto-extending data file:

innodb_data_home_dir =
innodb_data_file_path = /ibdata/ibdata1:10M:autoextend

Suppose that the data file has grown to 988MB over time. This is the innodb_data_file_path setting after modifying the size attribute to reflect the current data file size, and after specifying a new 50MB auto-extending data file:

innodb_data_home_dir =
innodb_data_file_path = /ibdata/ibdata1:988M;/disk2/ibdata2:50M:autoextend

When adding a new data file, do not specify an existing file name. InnoDB creates and initializes the new data file when you start the server.

Note

You cannot increase the size of an existing system tablespace data file by changing its size attribute. For example, changing the innodb_data_file_path setting from ibdata1:10M:autoextend to ibdata1:12M:autoextend produces the following error when starting the server:

[ERROR] [MY-012263] [InnoDB] The Auto-extending innodb_system 
data file './ibdata1' is of a different size 640 pages (rounded down to MB) than 
specified in the .cnf file: initial 768 pages, max 0 (relevant if non-zero) pages!

The error indicates that the existing data file size (expressed in InnoDB pages) is different from the size specified in the configuration file. If you encounter this error, restore the previous innodb_data_file_path setting, and refer to the system tablespace resizing instructions.

InnoDB page size is defined by the innodb_page_size variable. The default is 16384 bytes.

Decreasing the Size of the InnoDB System Tablespace

You cannot remove a data file from the system tablespace. To decrease the system tablespace size, use this procedure:

  1. Use mysqldump to dump all of your InnoDB tables, including InnoDB tables located in the mysql schema. Identify InnoDB tables in the mysql schema using the following query:

    mysql> SELECT TABLE_NAME from INFORMATION_SCHEMA.TABLES WHERE TABLE_SCHEMA='mysql' and ENGINE='InnoDB';
    +---------------------------+
    | TABLE_NAME                |
    +---------------------------+
    | engine_cost               |
    | gtid_executed             |
    | help_category             |
    | help_keyword              |
    | help_relation             |
    | help_topic                |
    | innodb_index_stats        |
    | innodb_table_stats        |
    | plugin                    |
    | server_cost               |
    | servers                   |
    | slave_master_info         |
    | slave_relay_log_info      |
    | slave_worker_info         |
    | time_zone                 |
    | time_zone_leap_second     |
    | time_zone_name            |
    | time_zone_transition      |
    | time_zone_transition_type |
    +---------------------------+
    
  2. Stop the server.

  3. Remove all of the existing tablespace files (*.ibd), including the ibdata and ib_log files. Do not forget to remove *.ibd files for tables located in the mysql schema.

  4. Remove any .frm files for InnoDB tables.

  5. Configure the data files for the new system tablespace. See System Tablespace Data File Configuration.

  6. Restart the server.

  7. Import the dump files.

Note

If your databases only use the InnoDB engine, it may be simpler to dump all databases, stop the server, remove all databases and InnoDB log files, restart the server, and import the dump files.

To avoid large system tablespaces, consider using file-per-table tablespaces for your data. File-per-table tablespaces are the default tablespace type and are used implicitly when creating an InnoDB table. Unlike the system tablespace, disk space is returned to the operating system after truncating or dropping a table created in a file-per-table tablespace. For more information, see Section 14.6.3.2, “File-Per-Table Tablespaces”.

Using Raw Disk Partitions for the System Tablespace

You can use raw disk partitions as data files in the InnoDB system tablespace. This technique enables nonbuffered I/O on Windows and on some Linux and Unix systems without file system overhead. Perform tests with and without raw partitions to verify whether this change actually improves performance on your system.

When you use a raw disk partition, ensure that the user ID that runs the MySQL server has read and write privileges for that partition. For example, if you run the server as the mysql user, the partition must be readable and writeable by mysql. If you run the server with the --memlock option, the server must be run as root, so the partition must be readable and writeable by root.

The procedures described below involve option file modification. For additional information, see Section 4.2.2.2, “Using Option Files”.

Allocating a Raw Disk Partition on Linux and Unix Systems
  1. When you create a new data file, specify the keyword newraw immediately after the data file size for the innodb_data_file_path option. The partition must be at least as large as the size that you specify. Note that 1MB in InnoDB is 1024 × 1024 bytes, whereas 1MB in disk specifications usually means 1,000,000 bytes.

    [mysqld]
    innodb_data_home_dir=
    innodb_data_file_path=/dev/hdd1:3Gnewraw;/dev/hdd2:2Gnewraw
  2. Restart the server. InnoDB notices the newraw keyword and initializes the new partition. However, do not create or change any InnoDB tables yet. Otherwise, when you next restart the server, InnoDB reinitializes the partition and your changes are lost. (As a safety measure InnoDB prevents users from modifying data when any partition with newraw is specified.)

  3. After InnoDB has initialized the new partition, stop the server, change newraw in the data file specification to raw:

    [mysqld]
    innodb_data_home_dir=
    innodb_data_file_path=/dev/hdd1:3Graw;/dev/hdd2:2Graw
  4. Restart the server. InnoDB now permits changes to be made.

Allocating a Raw Disk Partition on Windows

On Windows systems, the same steps and accompanying guidelines described for Linux and Unix systems apply except that the innodb_data_file_path setting differs slightly on Windows.

  1. When you create a new data file, specify the keyword newraw immediately after the data file size for the innodb_data_file_path option:

    [mysqld]
    innodb_data_home_dir=
    innodb_data_file_path=//./D::10Gnewraw

    The //./ corresponds to the Windows syntax of \\.\ for accessing physical drives. In the example above, D: is the drive letter of the partition.

  2. Restart the server. InnoDB notices the newraw keyword and initializes the new partition.

  3. After InnoDB has initialized the new partition, stop the server, change newraw in the data file specification to raw:

    [mysqld]
    innodb_data_home_dir=
    innodb_data_file_path=//./D::10Graw
  4. Restart the server. InnoDB now permits changes to be made.

14.6.3.2 File-Per-Table Tablespaces

A file-per-table tablespace contains data and indexes for a single InnoDB table, and is stored on the file system in its own data file.

File-per-table tablespace characteristics are described under the following topics in this section:

File-Per-Table Tablespace Configuration

InnoDB creates tables in file-per-table tablespaces by default. This behavior is controlled by the innodb_file_per_table variable. Disabling innodb_file_per_table causes InnoDB to create tables in the system tablespace.

An innodb_file_per_table setting can be specified in an option file or configured at runtime using a SET GLOBAL statement. Changing the setting at runtime requires privileges sufficient to set global system variables. See Section 5.1.8.1, “System Variable Privileges”.

Option file:

[mysqld]
innodb_file_per_table=ON

Using SET GLOBAL at runtime:

mysql> SET GLOBAL innodb_file_per_table=ON;

innodb_file_per_table is enabled by default in MySQL 5.6 and higher. You might consider disabling it if backward compatibility with earlier versions of MySQL is a concern.

Warning

Disabling innodb_file_per_table prevents table-copying ALTER TABLE operations from implicitly moving a table that resides in the system tablespace to a file-per-table tablespace. A table-copying ALTER TABLE operation recreates the table using the current innodb_file_per_table setting. This behavior does not apply when adding or dropping secondary indexes, nor does it apply to ALTER TABLE operations that use the INPLACE algorithm, or to tables added to the system tablespace using CREATE TABLE ... TABLESPACE or ALTER TABLE ... TABLESPACE syntax.

File-Per-Table Tablespace Data Files

A file-per-table tablespace is created in an .idb data file in a schema directory under the MySQL data directory. The .ibd file is named for the table (table_name.ibd). For example, the data file for table test.t1 is created in the test directory under the MySQL data directory:

mysql> USE test;  
  
mysql> CREATE TABLE t1 (
   id INT PRIMARY KEY AUTO_INCREMENT,
   name VARCHAR(100) 
 ) ENGINE = InnoDB; 
 
shell> cd /path/to/mysql/data/test
shell> ls 
t1.ibd

You can use the DATA DIRECTORY clause of the CREATE TABLE statement to implicitly create a file-per-table tablespace data file outside of the data directory. For more information, see Section 14.6.1.2, “Creating Tables Externally”.

File-Per-Table Tablespace Advantages

File-per-table tablespaces have the following advantages over shared tablespaces such as the system tablespace or general tablespaces.

  • Disk space is returned to the operating system after truncating or dropping a table created in a file-per-table tablespace. Truncating or dropping a table stored in a shared tablespace creates free space within the shared tablespace data file, which can only be used for InnoDB data. In other words, a shared tablespace data file does not shrink in size after a table is truncated or dropped.

  • A table-copying ALTER TABLE operation on a table that resides in a shared tablespace can increase the amount of disk space occupied by the tablespace. Such operations may require as much additional space as the data in the table plus indexes. This space is not released back to the operating system as it is for file-per-table tablespaces.

  • TRUNCATE TABLE performance is better when executed on tables that reside in file-per-table tablespaces.

  • File-per-table tablespace data files can be created on separate storage devices for I/O optimization, space management, or backup purposes. See Section 14.6.1.2, “Creating Tables Externally”.

  • You can import a table that resides in a file-per-table tablespace from another MySQL instance. See Section 14.6.1.3, “Importing InnoDB Tables”.

  • Tables created in file-per-table tablespaces use the Barracuda file format. See Section 14.10, “InnoDB File-Format Management”. The Barracuda file format enables features associated with DYNAMIC and COMPRESSED row formats. See Section 14.11, “InnoDB Row Formats”.

  • Tables stored in individual tablespace data files can save time and improve chances for a successful recovery when data corruption occurs, when backups or binary logs are unavailable, or when the MySQL server instance cannot be restarted.

  • You can backup or restore tables created in file-per-table tablespaces quickly using MySQL Enterprise Backup, without interrupting the use of other InnoDB tables. This is beneficial for tables on varying backup schedules or that require backup less frequently. See Making a Partial Backup for details.

  • File-per-table tablespaces permit monitoring table size on the file system by monitoring the size of the tablespace data file.

  • Common Linux file systems do not permit concurrent writes to a single file such as a shared tablespace data file when innodb_flush_method is set to O_DIRECT. As a result, there are possible performance improvements when using file-per-table tablespaces in conjunction with this setting.

  • Tables in a shared tablespace are limited in size by the 64TB tablespace size limit. By comparison, each file-per-table tablespace has a 64TB size limit, which provides plenty of room for individual tables to grow in size.

File-Per-Table Tablespace Disadvantages

File-per-table tablespaces have the following disadvantages compared to shared tablespaces such as the system tablespace or general tablespaces.

  • With file-per-table tablespaces, each table may have unused space that can only be utilized by rows of the same table, which can lead to wasted space if not properly managed.

  • fsync operations are performed on multiple file-per-table data files instead of a single shared tablespace data file. Because fsync operations are per file, write operations for multiple tables cannot be combined, which can result in a higher total number of fsync operations.

  • mysqld must keep an open file handle for each file-per-table tablespace, which may impact performance if you have numerous tables in file-per-table tablespaces.

  • More file descriptors are required when each table has its own data file.

  • There is potential for more fragmentation, which can impede DROP TABLE and table scan performance. However, if fragmentation is managed, file-per-table tablespaces can improve performance for these operations.

  • The buffer pool is scanned when dropping a table that resides in a file-per-table tablespace, which can take several seconds for large buffer pools. The scan is performed with a broad internal lock, which may delay other operations.

  • The innodb_autoextend_increment variable, which defines the increment size for extending the size of an auto-extending shared tablespace file when it becomes full, does not apply to file-per-table tablespace files, which are auto-extending regardless of the innodb_autoextend_increment setting. Initial file-per-table tablespace extensions are by small amounts, after which extensions occur in increments of 4MB.

14.6.3.3 General Tablespaces

A general tablespace is a shared InnoDB tablespace that is created using CREATE TABLESPACE syntax. General tablespace capabilities and features are described under the following topics in this section:

General Tablespace Capabilities

The general tablespace feature provides the following capabilities:

  • Similar to the system tablespace, general tablespaces are shared tablespaces that can store data for multiple tables.

  • General tablespaces have a potential memory advantage over file-per-table tablespaces. The server keeps tablespace metadata in memory for the lifetime of a tablespace. Multiple tables in fewer general tablespaces consume less memory for tablespace metadata than the same number of tables in separate file-per-table tablespaces.

  • General tablespace data files may be placed in a directory relative to or independent of the MySQL data directory, which provides you with many of the data file and storage management capabilities of file-per-table tablespaces. As with file-per-table tablespaces, the ability to place data files outside of the MySQL data directory allows you to manage performance of critical tables separately, setup RAID or DRBD for specific tables, or bind tables to particular disks, for example.

  • General tablespaces support both Antelope and Barracuda file formats, and therefore support all table row formats and associated features. With support for both file formats, general tablespaces have no dependence on innodb_file_format or innodb_file_per_table settings, nor do these variables have any effect on general tablespaces.

  • The TABLESPACE option can be used with CREATE TABLE to create tables in a general tablespaces, file-per-table tablespace, or in the system tablespace.

  • The TABLESPACE option can be used with ALTER TABLE to move tables between general tablespaces, file-per-table tablespaces, and the system tablespace. Previously, it was not possible to move a table from a file-per-table tablespace to the system tablespace. With the general tablespace feature, you can now do so.

Creating a General Tablespace

General tablespaces are created using CREATE TABLESPACE syntax.

CREATE TABLESPACE tablespace_name
    ADD DATAFILE 'file_name'
    [FILE_BLOCK_SIZE = value]
        [ENGINE [=] engine_name]

A general tablespace can be created in the data directory or outside of it. To avoid conflicts with implicitly created file-per-table tablespaces, creating a general tablespace in a subdirectory under the data directory is not supported. When creating a general tablespace outside of the data directory, the directory must exist prior to creating the tablespace.

An .isl file is created in the MySQL data directory when a general tablespace is created outside of the MySQL data directory.

Examples:

Creating a general tablespace in the data directory:

mysql> CREATE TABLESPACE `ts1` ADD DATAFILE 'ts1.ibd' Engine=InnoDB;

Creating a general tablespace in a directory outside of the data directory:

mysql> CREATE TABLESPACE `ts1` ADD DATAFILE '/my/tablespace/directory/ts1.ibd' Engine=InnoDB;

You can specify a path that is relative to the data directory as long as the tablespace directory is not under the data directory. In this example, the my_tablespace directory is at the same level as the data directory:

mysql> CREATE TABLESPACE `ts1` ADD DATAFILE '../my_tablespace/ts1.ibd' Engine=InnoDB;
Note

The ENGINE = InnoDB clause must be defined as part of the CREATE TABLESPACE statement, or InnoDB must be defined as the default storage engine (default_storage_engine=InnoDB).

Adding Tables to a General Tablespace

After creating an InnoDB general tablespace, you can use CREATE TABLE tbl_name ... TABLESPACE [=] tablespace_name or ALTER TABLE tbl_name TABLESPACE [=] tablespace_name to add tables to the tablespace, as shown in the following examples:

CREATE TABLE:

mysql> CREATE TABLE t1 (c1 INT PRIMARY KEY) TABLESPACE ts1;

ALTER TABLE:

mysql> ALTER TABLE t2 TABLESPACE ts1;
Note

Support for adding table partitions to shared tablespaces was deprecated in MySQL 5.7.24 and will be removed in a future MySQL version. Shared tablespaces include the InnoDB system tablespace and general tablespaces.

For detailed syntax information, see CREATE TABLE and ALTER TABLE.

General Tablespace Row Format Support

General tablespaces support all table row formats (REDUNDANT, COMPACT, DYNAMIC, COMPRESSED) with the caveat that compressed and uncompressed tables cannot coexist in the same general tablespace due to different physical page sizes.

For a general tablespace to contain compressed tables (ROW_FORMAT=COMPRESSED), FILE_BLOCK_SIZE must be specified, and the FILE_BLOCK_SIZE value must be a valid compressed page size in relation to the innodb_page_size value. Also, the physical page size of the compressed table (KEY_BLOCK_SIZE) must be equal to FILE_BLOCK_SIZE/1024. For example, if innodb_page_size=16KB and FILE_BLOCK_SIZE=8K, the KEY_BLOCK_SIZE of the table must be 8.

The following table shows permitted innodb_page_size, FILE_BLOCK_SIZE, and KEY_BLOCK_SIZE combinations. FILE_BLOCK_SIZE values may also be specified in bytes. To determine a valid KEY_BLOCK_SIZE value for a given FILE_BLOCK_SIZE, divide the FILE_BLOCK_SIZE value by 1024. Table compression is not support for 32K and 64K InnoDB page sizes. For more information about KEY_BLOCK_SIZE, see CREATE TABLE, and Section 14.9.1.2, “Creating Compressed Tables”.

Table 14.3 Permitted Page Size, FILE_BLOCK_SIZE, and KEY_BLOCK_SIZE Combinations for Compressed Tables

InnoDB Page Size (innodb_page_size) Permitted FILE_BLOCK_SIZE Value Permitted KEY_BLOCK_SIZE Value
64KB 64K (65536) Compression is not supported
32KB 32K (32768) Compression is not supported
16KB 16K (16384) N/A: If innodb_page_size is equal to FILE_BLOCK_SIZE, the tablespace cannot contain a compressed table.
16KB 8K (8192) 8
16KB 4K (4096) 4
16KB 2K (2048) 2
16KB 1K (1024) 1
8KB 8K (8192) N/A: If innodb_page_size is equal to FILE_BLOCK_SIZE, the tablespace cannot contain a compressed table.
8KB 4K (4096) 4
8KB 2K (2048) 2
8KB 1K (1024) 1
4KB 4K (4096) N/A: If innodb_page_size is equal to FILE_BLOCK_SIZE, the tablespace cannot contain a compressed table.
4K 2K (2048) 2
4KB 1K (1024) 1

This example demonstrates creating a general tablespace and adding a compressed table. The example assumes a default innodb_page_size of 16KB. The FILE_BLOCK_SIZE of 8192 requires that the compressed table have a KEY_BLOCK_SIZE of 8.

mysql> CREATE TABLESPACE `ts2` ADD DATAFILE 'ts2.ibd' FILE_BLOCK_SIZE = 8192 Engine=InnoDB;

mysql> CREATE TABLE t4 (c1 INT PRIMARY KEY) TABLESPACE ts2 ROW_FORMAT=COMPRESSED KEY_BLOCK_SIZE=8;

If you do not specify FILE_BLOCK_SIZE when creating a general tablespace, FILE_BLOCK_SIZE defaults to innodb_page_size. When FILE_BLOCK_SIZE is equal to innodb_page_size, the tablespace may only contain tables with an uncompressed row format (COMPACT, REDUNDANT, and DYNAMIC row formats).

Moving Tables Between Tablespaces Using ALTER TABLE

You can use ALTER TABLE with the TABLESPACE option to move a table to an existing general tablespace, to a new file-per-table tablespace, or to the system tablespace.

Note

Support for placing table partitions in shared tablespaces was deprecated in MySQL 5.7.24 and will be removed in a future MySQL version. Shared tablespaces include the InnoDB system tablespace and general tablespaces.

To move a table from a file-per-table tablespace or from the system tablespace to a general tablespace, specify the name of the general tablespace. The general tablespace must exist. See CREATE TABLESPACE for more information.

ALTER TABLE tbl_name TABLESPACE [=] tablespace_name;

To move a table from a general tablespace or file-per-table tablespace to the system tablespace, specify innodb_system as the tablespace name.

ALTER TABLE tbl_name TABLESPACE [=] innodb_system;

To move a table from the system tablespace or a general tablespace to a file-per-table tablespace, specify innodb_file_per_table as the tablespace name.

ALTER TABLE tbl_name TABLESPACE [=] innodb_file_per_table;

ALTER TABLE ... TABLESPACE operations always cause a full table rebuild, even if the TABLESPACE attribute has not changed from its previous value.

ALTER TABLE ... TABLESPACE syntax does not support moving a table from a temporary tablespace to a persistent tablespace.

The DATA DIRECTORY clause is permitted with CREATE TABLE ... TABLESPACE=innodb_file_per_table but is otherwise not supported for use in combination with the TABLESPACE option.

Restrictions apply when moving tables from encrypted tablespaces. See Encryption Limitations.

Dropping a General Tablespace

The DROP TABLESPACE statement is used to drop an InnoDB general tablespace.

All tables must be dropped from the tablespace prior to a DROP TABLESPACE operation. If the tablespace is not empty, DROP TABLESPACE returns an error.

Use a query similar to the following to identify tables in a general tablespace.

mysql> SELECT a.NAME AS space_name, b.NAME AS table_name FROM INFORMATION_SCHEMA.INNODB_TABLESPACES a, 
       INFORMATION_SCHEMA.INNODB_TABLES b WHERE a.SPACE=b.SPACE AND a.NAME LIKE 'ts1';
+------------+------------+
| space_name | table_name |
+------------+------------+
| ts1        | test/t1    |
| ts1        | test/t2    |
| ts1        | test/t3    |
+------------+------------+

If a DROP TABLESPACE operation on an empty general tablespace returns an error, the tablespace may contain an orphan temporary or intermediate table that was left by an ALTER TABLE operation that was interrupted by a server exit. For more information, see Section 14.22.3, “Troubleshooting InnoDB Data Dictionary Operations”.

A general InnoDB tablespace is not deleted automatically when the last table in the tablespace is dropped. The tablespace must be dropped explicitly using DROP TABLESPACE tablespace_name.

A general tablespace does not belong to any particular database. A DROP DATABASE operation can drop tables that belong to a general tablespace but it cannot drop the tablespace, even if the DROP DATABASE operation drops all tables that belong to the tablespace. A general tablespace must be dropped explicitly using DROP TABLESPACE tablespace_name.

Similar to the system tablespace, truncating or dropping tables stored in a general tablespace creates free space internally in the general tablespace .ibd data file which can only be used for new InnoDB data. Space is not released back to the operating system as it is when a file-per-table tablespace is deleted during a DROP TABLE operation.

This example demonstrates how to drop an InnoDB general tablespace. The general tablespace ts1 is created with a single table. The table must be dropped before dropping the tablespace.

mysql> CREATE TABLESPACE `ts1` ADD DATAFILE 'ts1.ibd' Engine=InnoDB;

mysql> CREATE TABLE t1 (c1 INT PRIMARY KEY) TABLESPACE ts1 Engine=InnoDB;

mysql> DROP TABLE t1;

mysql> DROP TABLESPACE ts1;
Note

tablespace_name is a case-sensitive identifier in MySQL.

General Tablespace Limitations
  • A generated or existing tablespace cannot be changed to a general tablespace.

  • Creation of temporary general tablespaces is not supported.

  • General tablespaces do not support temporary tables.

  • Tables stored in a general tablespace may only be opened in MySQL releases that support general tablespaces.

  • Similar to the system tablespace, truncating or dropping tables stored in a general tablespace creates free space internally in the general tablespace .ibd data file which can only be used for new InnoDB data. Space is not released back to the operating system as it is for file-per-table tablespaces.

    Additionally, a table-copying ALTER TABLE operation on table that resides in a shared tablespace (a general tablespace or the system tablespace) can increase the amount of space used by the tablespace. Such operations require as much additional space as the data in the table plus indexes. The additional space required for the table-copying ALTER TABLE operation is not released back to the operating system as it is for file-per-table tablespaces.

  • ALTER TABLE ... DISCARD TABLESPACE and ALTER TABLE ...IMPORT TABLESPACE are not supported for tables that belong to a general tablespace.

  • Support for placing table partitions in general tablespaces was deprecated in MySQL 5.7.24 and will be removed in a future MySQL version.

14.6.3.4 Undo Tablespaces

Undo tablespaces contain undo logs, which are collections of undo log records that contain information about how to undo the latest change by a transaction to a clustered index record. Undo logs exist within undo log segments, which are contained within rollback segments. The innodb_rollback_segments variable defines the number of rollback segments allocated to each undo tablespace.

Undo logs can be stored in one or more undo tablespaces instead of the system tablespace. This layout differs from the default configuration in which undo logs reside in the system tablespace. The I/O patterns for undo logs make undo tablespaces good candidates for SSD storage, while keeping the system tablespace on hard disk storage.

The number of undo tablespaces used by InnoDB is controlled by the innodb_undo_tablespaces configuration option. This option can only be configured when initializing the MySQL instance. It cannot be changed afterward.

Note

The innodb_undo_tablespaces configuration option is deprecated and will be removed in a future release.

Undo tablespaces and individual segments inside those tablespaces cannot be dropped. However, undo logs stored in undo tablespaces can be truncated. For more information, see Truncating Undo Tablespaces.

Configuring Undo Tablespaces

To configure undo tablespaces for a MySQL instance, perform the following steps. It is assumed that you are performing the procedure on a test instance prior to deploying the configuration to a production system.

Important

The number of undo tablespaces can only be configured when initializing a MySQL instance and is fixed for the life of the instance.

  1. Specify a directory location for undo tablespaces using the innodb_undo_directory configuration option. If a directory location is not specified, undo tablespaces are created in the data directory.

  2. Define the number of rollback segments using the innodb_rollback_segments configuration option. Start with a relatively low value and increase it incrementally over time to examine the effect on performance. The default setting for innodb_rollback_segments is 128, which is also the maximum value.

    One rollback segment is always assigned to the system tablespace, and 32 rollback segments are reserved for the temporary tablespace (ibtmp1). Therefore, to allocate rollback segments to undo tablespaces, set innodb_rollback_segments to a value greater than 33. For example, if you have two undo tablespaces, set innodb_rollback_segments to 35 to assign one rollback segment to each of the two undo tablespaces. Rollback segments are distributed among undo tablespaces in a circular fashion.

    When you configure separate undo tablespaces, the rollback segment in the system tablespace is rendered inactive.

  3. Define the number of undo tablespaces using the innodb_undo_tablespaces option. The specified number of undo tablespaces is fixed for the life of the MySQL instance, so if you are uncertain about an optimal value, estimate on the high side.

  4. Create a new MySQL test instance using the option values you have chosen.

  5. Use a realistic workload on your test instance with data volume similar to your production servers to test the configuration.

  6. Benchmark the performance of I/O intensive workloads.

  7. Periodically increase the value of innodb_rollback_segments and rerun performance tests until there are no further improvements in I/O performance.

Truncating Undo Tablespaces

Truncating undo tablespaces requires that the MySQL instance have a minimum of two active undo tablespaces, which ensures that one undo tablespace remains active while the other is taken offline to be truncated. The number of undo tablespaces is defined by the innodb_undo_tablespaces variable. The default value is 0. Use this statement to check the value of innodb_undo_tablespaces:

mysql> SELECT @@innodb_undo_tablespaces;
+---------------------------+
| @@innodb_undo_tablespaces |
+---------------------------+
|                         2 |
+---------------------------+

To have undo tablespaces truncated, enable the innodb_undo_log_truncate variable. For example:

mysql> SET GLOBAL innodb_undo_log_truncate=ON;

When the innodb_undo_log_truncate variable is enabled, undo tablespaces that exceed the size limit defined by the innodb_max_undo_log_size variable are subject to truncation. The innodb_max_undo_log_size variable is dynamic and has a default value of 1073741824 bytes (1024 MiB).

mysql> SELECT @@innodb_max_undo_log_size;
+----------------------------+
| @@innodb_max_undo_log_size |
+----------------------------+
|                 1073741824 |
+----------------------------+

When the innodb_undo_log_truncate variable is enabled:

  1. Undo tablespaces that exceed the innodb_max_undo_log_size setting are marked for truncation. Selection of an undo tablespace for truncation is performed in a circular fashion to avoid truncating the same undo tablespace each time.

  2. Rollback segments residing in the selected undo tablespace are made inactive so that they are not assigned to new transactions. Existing transactions that are currently using rollback segments are permitted to finish.

  3. The purge system frees rollback segments that are no longer in use.

  4. After all rollback segments in the undo tablespace are freed, the truncate operation runs and truncates the undo tablespace to its initial size. The initial size of an undo tablespace depends on the innodb_page_size value. For the default 16KB page size, the initial undo tablespace file size is 10MiB. For 4KB, 8KB, 32KB, and 64KB page sizes, the initial undo tablespace files sizes are 7MiB, 8MiB, 20MiB, and 40MiB, respectively.

    The size of an undo tablespace after a truncate operation may be larger than the initial size due to immediate use following the completion of the operation.

    The innodb_undo_directory variable defines the location of undo tablespace files. If the innodb_undo_directory variable is undefined, undo tablespaces reside in the data directory.

  5. Rollback segments are reactivated so that they can be assigned to new transactions.

Expediting Truncation of Undo Tablespaces

The purge thread is responsible for emptying and truncating undo tablespaces. By default, the purge thread looks for undo tablespaces to truncate once every 128 times that purge is invoked. The frequency with which the purge thread looks for undo tablespaces to truncate is controlled by the innodb_purge_rseg_truncate_frequency variable, which has a default setting of 128.

mysql> SELECT @@innodb_purge_rseg_truncate_frequency;
+----------------------------------------+
| @@innodb_purge_rseg_truncate_frequency |
+----------------------------------------+
|                                    128 |
+----------------------------------------+

To increase that frequency, decrease the innodb_purge_rseg_truncate_frequency setting. For example, to have the purge thread look for undo tabespaces once every 32 timees that purge is invoked, set innodb_purge_rseg_truncate_frequency to 32.

mysql> SET GLOBAL innodb_purge_rseg_truncate_frequency=32;

When the purge thread finds an undo tablespace that requires truncation, the purge thread returns with increased frequency to quickly empty and truncate the undo tablespace.

Performance Impact of Truncating Undo Tablespace Files

When an undo tablespace is truncated, the rollback segments in the undo tablespace are deactivated. The active rollback segments in other undo tablespaces assume responsibility for the entire system load, which may result in a slight performance degradation. The amount of performance degradation depends on a number of factors:

  • Number of undo tablespaces

  • Number of undo logs

  • Undo tablespace size

  • Speed of the I/O susbsystem

  • Existing long running transactions

  • System load

The easiest way to avoid impacting performance when truncating undo tablespaces is to increase the number of undo tablespaces.

14.6.3.5 The Temporary Tablespace

Non-compressed, user-created temporary tables and on-disk internal temporary tables are created in a shared temporary tablespace. The innodb_temp_data_file_path configuration option defines the relative path, name, size, and attributes for temporary tablespace data files. If no value is specified for innodb_temp_data_file_path, the default behavior is to create an auto-extending data file named ibtmp1 in the innodb_data_home_dir directory that is slightly larger than 12MB.

Note

In MySQL 5.6, non-compressed temporary tables are created in individual file-per-table tablespaces in the temporary file directory, or in the InnoDB system tablespace in the data directory if innodb_file_per_table is disabled. The introduction of a shared temporary tablespace in MySQL 5.7 removes performance costs associated with creating and removing a file-per-table tablespace for each temporary table. A dedicated temporary tablespace also means that it is no longer necessary to save temporary table metadata to the InnoDB system tables.

Compressed temporary tables, which are temporary tables created using the ROW_FORMAT=COMPRESSED attribute, are created in file-per-table tablespaces in the temporary file directory.

The temporary tablespace is removed on normal shutdown or on an aborted initialization, and is recreated each time the server is started. The temporary tablespace receives a dynamically generated space ID when it is created. Startup is refused if the temporary tablespace cannot be created. The temporary tablespace is not removed if the server halts unexpectedly. In this case, a database administrator can remove the temporary tablespace manually or restart the server, which removes and recreates the temporary tablespace automatically.

The temporary tablespace cannot reside on a raw device.

INFORMATION_SCHEMA.FILES provides metadata about the InnoDB temporary tablespace. Issue a query similar to this one to view temporary tablespace metadata:

mysql> SELECT * FROM INFORMATION_SCHEMA.FILES WHERE TABLESPACE_NAME='innodb_temporary'\G

INFORMATION_SCHEMA.INNODB_TEMP_TABLE_INFO provides metadata about user-created temporary tables that are currently active within an InnoDB instance. For more information, see Section 14.16.7, “InnoDB INFORMATION_SCHEMA Temporary Table Info Table”.

Managing Temporary Tablespace Data File Size

By default, the temporary tablespace data file is autoextending and increases in size as necessary to accommodate on-disk temporary tables. For example, if an operation creates a temporary table that is 20MB in size, the temporary tablespace data file, which is 12MB in size by default when created, extends in size to accommodate it. When temporary tables are dropped, freed space can be reused for new temporary tables, but the data file remains at the extended size.

An autoextending temporary tablespace data file can become large in environments that use large temporary tables or that use temporary tables extensively. A large data file can also result from long running queries that use temporary tables.

To determine if a temporary tablespace data file is autoextending, check the innodb_temp_data_file_path setting:

mysql> SELECT @@innodb_temp_data_file_path;
+------------------------------+
| @@innodb_temp_data_file_path |
+------------------------------+
| ibtmp1:12M:autoextend        |
+------------------------------+

To check the size of temporary tablespace data files, query the INFORMATION_SCHEMA.FILES table using a query similar to this:

mysql> SELECT FILE_NAME, TABLESPACE_NAME, ENGINE, INITIAL_SIZE, TOTAL_EXTENTS*EXTENT_SIZE 
       AS TotalSizeBytes, DATA_FREE, MAXIMUM_SIZE FROM INFORMATION_SCHEMA.FILES 
       WHERE TABLESPACE_NAME = 'innodb_temporary'\G
*************************** 1. row ***************************
      FILE_NAME: ./ibtmp1
TABLESPACE_NAME: innodb_temporary
         ENGINE: InnoDB
   INITIAL_SIZE: 12582912
 TotalSizeBytes: 12582912
      DATA_FREE: 6291456
   MAXIMUM_SIZE: NULL

The TotalSizeBytes value reports the current size of the temporary tablespace data file. For information about other field values, see Section 24.9, “The INFORMATION_SCHEMA FILES Table”.

Alternatively, check the temporary tablespace data file size on your operating system. By default, the temporary tablespace data file is located in the directory defined by the innodb_temp_data_file_path configuration option. If a value was not specified for this option explicitly, a temporary tablespace data file named ibtmp1 is created in innodb_data_home_dir, which defaults to the MySQL data directory if unspecified.

To reclaim disk space occupied by a temporary tablespace data file, restart the MySQL server. Restarting the server removes and recreates the temporary tablespace data file according to the attributes defined by innodb_temp_data_file_path.

To prevent the temporary data file from becoming too large, you can configure the innodb_temp_data_file_path option to specify a maximum file size. For example:

[mysqld]
innodb_temp_data_file_path=ibtmp1:12M:autoextend:max:500M

When the data file reaches the maximum size, queries fail with an error indicating that the table is full. Configuring innodb_temp_data_file_path requires restarting the server.

Alternatively, configure the default_tmp_storage_engine and internal_tmp_disk_storage_engine options, which define the storage engine to use for user-created and on-disk internal temporary tables, respectively. Both options are set to InnoDB by default. The MyISAM storage engine uses an individual file for each temporary table, which is removed when the temporary table is dropped.

14.6.4 InnoDB Data Dictionary

The InnoDB data dictionary is comprised of internal system tables that contain metadata used to keep track of objects such as tables, indexes, and table columns. The metadata is physically located in the InnoDB system tablespace. For historical reasons, data dictionary metadata overlaps to some degree with information stored in InnoDB table metadata files (.frm files).

14.6.5 Doublewrite Buffer

The doublewrite buffer is a storage area in the system tablespace where InnoDB writes pages that are flushed from the buffer pool before writing them to their proper positions in the data file. Only after flushing and writing pages to the doublewrite buffer does InnoDB write pages to their proper positions. If there is an operating system, storage subsystem, or mysqld process crash in the middle of a page write, InnoDB can find a good copy of the page from the doublewrite buffer during crash recovery.

Although data is always written twice, the doublewrite buffer does not require twice as much I/O overhead or twice as many I/O operations. Data is written to the doublewrite buffer as a large sequential chunk, with a single fsync() call to the operating system.

The doublewrite buffer is enabled by default in most cases. To disable the doublewrite buffer, set innodb_doublewrite to 0.

If system tablespace files (ibdata files) are located on Fusion-io devices that support atomic writes, doublewrite buffering is automatically disabled and Fusion-io atomic writes are used for all data files. Because the doublewrite buffer setting is global, doublewrite buffering is also disabled for data files residing on non-Fusion-io hardware. This feature is only supported on Fusion-io hardware and is only enabled for Fusion-io NVMFS on Linux. To take full advantage of this feature, an innodb_flush_method setting of O_DIRECT is recommended.

14.6.6 Redo Log

The redo log is a disk-based data structure used during crash recovery to correct data written by incomplete transactions. During normal operations, the redo log encodes requests to change table data that result from SQL statements or low-level API calls. Modifications that did not finish updating the data files before an unexpected shutdown are replayed automatically during initialization, and before the connections are accepted. For information about the role of the redo log in crash recovery, see Section 14.19.2, “InnoDB Recovery”.

By default, the redo log is physically represented on disk by two files named ib_logfile0 and ib_logfile1. MySQL writes to the redo log files in a circular fashion. Data in the redo log is encoded in terms of records affected; this data is collectively referred to as redo. The passage of data through the redo log is represented by an ever-increasing LSN value.

For related information, see Redo Log File Configuration, and Section 8.5.4, “Optimizing InnoDB Redo Logging”.

Changing the Number or Size of InnoDB Redo Log Files

To change the number or the size of your InnoDB redo log files, perform the following steps:

  1. Stop the MySQL server and make sure that it shuts down without errors.

  2. Edit my.cnf to change the log file configuration. To change the log file size, configure innodb_log_file_size. To increase the number of log files, configure innodb_log_files_in_group.

  3. Start the MySQL server again.

If InnoDB detects that the innodb_log_file_size differs from the redo log file size, it writes a log checkpoint, closes and removes the old log files, creates new log files at the requested size, and opens the new log files.

Group Commit for Redo Log Flushing

InnoDB, like any other ACID-compliant database engine, flushes the redo log of a transaction before it is committed. InnoDB uses group commit functionality to group multiple such flush requests together to avoid one flush for each commit. With group commit, InnoDB issues a single write to the log file to perform the commit action for multiple user transactions that commit at about the same time, significantly improving throughput.

For more information about performance of COMMIT and other transactional operations, see Section 8.5.2, “Optimizing InnoDB Transaction Management”.

14.6.7 Undo Logs

An undo log is a collection of undo log records associated with a single read-write transaction. An undo log record contains information about how to undo the latest change by a transaction to a clustered index record. If another transaction needs to see the original data as part of a consistent read operation, the unmodified data is retrieved from undo log records. Undo logs exist within undo log segments, which are contained within rollback segments. Rollback segments reside in the system tablespace, in undo tablespaces, and in the temporary tablespace.

Undo logs that reside in the temporary tablespace are used for transactions that modify data in user-defined temporary tables. These undo logs are not redo-logged, as they are not required for crash recovery. They are used only for rollback while the server is running. This type of undo log benefits performance by avoiding redo logging I/O.

InnoDB supports a maximum of 128 rollback segments, 32 of which are allocated to the temporary tablespace. This leaves 96 rollback segments that can be assigned to transactions that modify data in regular tables. The innodb_rollback_segments variable defines the number of rollback segments used by InnoDB.

The number of transactions that a rollback segment supports depends on the number of undo slots in the rollback segment and the number of undo logs required by each transaction.

The number of undo slots in a rollback segment differs according to InnoDB page size.

InnoDB Page Size Number of Undo Slots in a Rollback Segment (InnoDB Page Size / 16)
4096 (4KB) 256
8192 (8KB) 512
16384 (16KB) 1024
32768 (32KB) 2048
65536 (64KB) 4096

A transaction is assigned up to four undo logs, one for each of the following operation types:

  1. INSERT operations on user-defined tables

  2. UPDATE and DELETE operations on user-defined tables

  3. INSERT operations on user-defined temporary tables

  4. UPDATE and DELETE operations on user-defined temporary tables

Undo logs are assigned as needed. For example, a transaction that performs INSERT, UPDATE, and DELETE operations on regular and temporary tables requires a full assignment of four undo logs. A transaction that performs only INSERT operations on regular tables requires a single undo log.

A transaction that performs operations on regular tables is assigned undo logs from an assigned system tablespace or undo tablespace rollback segment. A transaction that performs operations on temporary tables is assigned undo logs from an assigned temporary tablespace rollback segment.

An undo log assigned to a transaction remains tied to the transaction for its duration. For example, an undo log assigned to a transaction for an INSERT operation on a regular table is used for all INSERT operations on regular tables performed by that transaction.

Given the factors described above, the following formulas can be used to estimate the number of concurrent read-write transactions that InnoDB is capable of supporting.

Note

A transaction can encounter a concurrent transaction limit error before reaching the number of concurrent read-write transactions that InnoDB is capable of supporting. This occurs when the rollback segment assigned to a transaction runs out of undo slots. In such cases, try rerunning the transaction.

When transactions perform operations on temporary tables, the number of concurrent read-write transactions that InnoDB is capable of supporting is constrained by the number of rollback segments allocated to the temporary tablespace, which is 32.

  • If each transaction performs either an INSERT or an UPDATE or DELETE operation, the number of concurrent read-write transactions that InnoDB is capable of supporting is:

    (innodb_page_size / 16) * (innodb_rollback_segments - 32) 
    
  • If each transaction performs an INSERT and an UPDATE or DELETE operation, the number of concurrent read-write transactions that InnoDB is capable of supporting is:

    (innodb_page_size / 16 / 2) * (innodb_rollback_segments - 32)
    
  • If each transaction performs an INSERT operation on a temporary table, the number of concurrent read-write transactions that InnoDB is capable of supporting is:

    (innodb_page_size / 16) * 32 
    
  • If each transaction performs an INSERT and an UPDATE or DELETE operation on a temporary table, the number of concurrent read-write transactions that InnoDB is capable of supporting is:

    (innodb_page_size / 16 / 2) * 32 
    

14.7 InnoDB Locking and Transaction Model

To implement a large-scale, busy, or highly reliable database application, to port substantial code from a different database system, or to tune MySQL performance, it is important to understand InnoDB locking and the InnoDB transaction model.

This section discusses several topics related to InnoDB locking and the InnoDB transaction model with which you should be familiar.

14.7.1 InnoDB Locking

This section describes lock types used by InnoDB.

Shared and Exclusive Locks

InnoDB implements standard row-level locking where there are two types of locks, shared (S) locks and exclusive (X) locks.

  • A shared (S) lock permits the transaction that holds the lock to read a row.

  • An exclusive (X) lock permits the transaction that holds the lock to update or delete a row.

If transaction T1 holds a shared (S) lock on row r, then requests from some distinct transaction T2 for a lock on row r are handled as follows:

  • A request by T2 for an S lock can be granted immediately. As a result, both T1 and T2 hold an S lock on r.

  • A request by T2 for an X lock cannot be granted immediately.

If a transaction T1 holds an exclusive (X) lock on row r, a request from some distinct transaction T2 for a lock of either type on r cannot be granted immediately. Instead, transaction T2 has to wait for transaction T1 to release its lock on row r.

Intention Locks

InnoDB supports multiple granularity locking which permits coexistence of row locks and table locks. For example, a statement such as LOCK TABLES ... WRITE takes an exclusive lock (an X lock) on the specified table. To make locking at multiple granularity levels practical, InnoDB uses intention locks. Intention locks are table-level locks that indicate which type of lock (shared or exclusive) a transaction requires later for a row in a table. There are two types of intention locks:

  • An intention shared lock (IS) indicates that a transaction intends to set a shared lock on individual rows in a table.

  • An intention exclusive lock (IX) indicates that a transaction intends to set an exclusive lock on individual rows in a table.

For example, SELECT ... LOCK IN SHARE MODE sets an IS lock, and SELECT ... FOR UPDATE sets an IX lock.

The intention locking protocol is as follows:

  • Before a transaction can acquire a shared lock on a row in a table, it must first acquire an IS lock or stronger on the table.

  • Before a transaction can acquire an exclusive lock on a row in a table, it must first acquire an IX lock on the table.

Table-level lock type compatibility is summarized in the following matrix.

X IX S IS
X Conflict Conflict Conflict Conflict
IX Conflict Compatible Conflict Compatible
S Conflict Conflict Compatible Compatible
IS Conflict Compatible Compatible Compatible

A lock is granted to a requesting transaction if it is compatible with existing locks, but not if it conflicts with existing locks. A transaction waits until the conflicting existing lock is released. If a lock request conflicts with an existing lock and cannot be granted because it would cause deadlock, an error occurs.

Intention locks do not block anything except full table requests (for example, LOCK TABLES ... WRITE). The main purpose of intention locks is to show that someone is locking a row, or going to lock a row in the table.

Transaction data for an intention lock appears similar to the following in SHOW ENGINE INNODB STATUS and InnoDB monitor output:

TABLE LOCK table `test`.`t` trx id 10080 lock mode IX

Record Locks

A record lock is a lock on an index record. For example, SELECT c1 FROM t WHERE c1 = 10 FOR UPDATE; prevents any other transaction from inserting, updating, or deleting rows where the value of t.c1 is 10.

Record locks always lock index records, even if a table is defined with no indexes. For such cases, InnoDB creates a hidden clustered index and uses this index for record locking. See Section 14.6.2.1, “Clustered and Secondary Indexes”.

Transaction data for a record lock appears similar to the following in SHOW ENGINE INNODB STATUS and InnoDB monitor output:

RECORD LOCKS space id 58 page no 3 n bits 72 index `PRIMARY` of table `test`.`t` 
trx id 10078 lock_mode X locks rec but not gap
Record lock, heap no 2 PHYSICAL RECORD: n_fields 3; compact format; info bits 0
 0: len 4; hex 8000000a; asc     ;;
 1: len 6; hex 00000000274f; asc     'O;;
2: len 7; hex b60000019d0110; asc        ;;

Gap Locks

A gap lock is a lock on a gap between index records, or a lock on the gap before the first or after the last index record. For example, SELECT c1 FROM t WHERE c1 BETWEEN 10 and 20 FOR UPDATE; prevents other transactions from inserting a value of 15 into column t.c1, whether or not there was already any such value in the column, because the gaps between all existing values in the range are locked.

A gap might span a single index value, multiple index values, or even be empty.

Gap locks are part of the tradeoff between performance and concurrency, and are used in some transaction isolation levels and not others.

Gap locking is not needed for statements that lock rows using a unique index to search for a unique row. (This does not include the case that the search condition includes only some columns of a multiple-column unique index; in that case, gap locking does occur.) For example, if the id column has a unique index, the following statement uses only an index-record lock for the row having id value 100 and it does not matter whether other sessions insert rows in the preceding gap:

SELECT * FROM child WHERE id = 100;

If id is not indexed or has a nonunique index, the statement does lock the preceding gap.

It is also worth noting here that conflicting locks can be held on a gap by different transactions. For example, transaction A can hold a shared gap lock (gap S-lock) on a gap while transaction B holds an exclusive gap lock (gap X-lock) on the same gap. The reason conflicting gap locks are allowed is that if a record is purged from an index, the gap locks held on the record by different transactions must be merged.

Gap locks in InnoDB are purely inhibitive, which means that their only purpose is to prevent other transactions from inserting to the gap. Gap locks can co-exist. A gap lock taken by one transaction does not prevent another transaction from taking a gap lock on the same gap. There is no difference between shared and exclusive gap locks. They do not conflict with each other, and they perform the same function.

Gap locking can be disabled explicitly. This occurs if you change the transaction isolation level to READ COMMITTED or enable the innodb_locks_unsafe_for_binlog system variable (which is now deprecated). Under these circumstances, gap locking is disabled for searches and index scans and is used only for foreign-key constraint checking and duplicate-key checking.

There are also other effects of using the READ COMMITTED isolation level or enabling innodb_locks_unsafe_for_binlog. Record locks for nonmatching rows are released after MySQL has evaluated the WHERE condition. For UPDATE statements, InnoDB does a semi-consistent read, such that it returns the latest committed version to MySQL so that MySQL can determine whether the row matches the WHERE condition of the UPDATE.

Next-Key Locks

A next-key lock is a combination of a record lock on the index record and a gap lock on the gap before the index record.

InnoDB performs row-level locking in such a way that when it searches or scans a table index, it sets shared or exclusive locks on the index records it encounters. Thus, the row-level locks are actually index-record locks. A next-key lock on an index record also affects the gap before that index record. That is, a next-key lock is an index-record lock plus a gap lock on the gap preceding the index record. If one session has a shared or exclusive lock on record R in an index, another session cannot insert a new index record in the gap immediately before R in the index order.

Suppose that an index contains the values 10, 11, 13, and 20. The possible next-key locks for this index cover the following intervals, where a round bracket denotes exclusion of the interval endpoint and a square bracket denotes inclusion of the endpoint:

(negative infinity, 10]
(10, 11]
(11, 13]
(13, 20]
(20, positive infinity)

For the last interval, the next-key lock locks the gap above the largest value in the index and the supremum pseudo-record having a value higher than any value actually in the index. The supremum is not a real index record, so, in effect, this next-key lock locks only the gap following the largest index value.

By default, InnoDB operates in REPEATABLE READ transaction isolation level. In this case, InnoDB uses next-key locks for searches and index scans, which prevents phantom rows (see Section 14.7.4, “Phantom Rows”).

Transaction data for a next-key lock appears similar to the following in SHOW ENGINE INNODB STATUS and InnoDB monitor output:

RECORD LOCKS space id 58 page no 3 n bits 72 index `PRIMARY` of table `test`.`t` 
trx id 10080 lock_mode X
Record lock, heap no 1 PHYSICAL RECORD: n_fields 1; compact format; info bits 0
 0: len 8; hex 73757072656d756d; asc supremum;;

Record lock, heap no 2 PHYSICAL RECORD: n_fields 3; compact format; info bits 0
 0: len 4; hex 8000000a; asc     ;;
 1: len 6; hex 00000000274f; asc     'O;;
2: len 7; hex b60000019d0110; asc        ;;

Insert Intention Locks

An insert intention lock is a type of gap lock set by INSERT operations prior to row insertion. This lock signals the intent to insert in such a way that multiple transactions inserting into the same index gap need not wait for each other if they are not inserting at the same position within the gap. Suppose that there are index records with values of 4 and 7. Separate transactions that attempt to insert values of 5 and 6, respectively, each lock the gap between 4 and 7 with insert intention locks prior to obtaining the exclusive lock on the inserted row, but do not block each other because the rows are nonconflicting.

The following example demonstrates a transaction taking an insert intention lock prior to obtaining an exclusive lock on the inserted record. The example involves two clients, A and B.

Client A creates a table containing two index records (90 and 102) and then starts a transaction that places an exclusive lock on index records with an ID greater than 100. The exclusive lock includes a gap lock before record 102:

mysql> CREATE TABLE child (id int(11) NOT NULL, PRIMARY KEY(id)) ENGINE=InnoDB;
mysql> INSERT INTO child (id) values (90),(102);

mysql> START TRANSACTION;
mysql> SELECT * FROM child WHERE id > 100 FOR UPDATE;
+-----+
| id  |
+-----+
| 102 |
+-----+

Client B begins a transaction to insert a record into the gap. The transaction takes an insert intention lock while it waits to obtain an exclusive lock.

mysql> START TRANSACTION;
mysql> INSERT INTO child (id) VALUES (101);

Transaction data for an insert intention lock appears similar to the following in SHOW ENGINE INNODB STATUS and InnoDB monitor output:

RECORD LOCKS space id 31 page no 3 n bits 72 index `PRIMARY` of table `test`.`child`
trx id 8731 lock_mode X locks gap before rec insert intention waiting
Record lock, heap no 3 PHYSICAL RECORD: n_fields 3; compact format; info bits 0
 0: len 4; hex 80000066; asc    f;;
 1: len 6; hex 000000002215; asc     " ;;
 2: len 7; hex 9000000172011c; asc     r  ;;...

AUTO-INC Locks

An AUTO-INC lock is a special table-level lock taken by transactions inserting into tables with AUTO_INCREMENT columns. In the simplest case, if one transaction is inserting values into the table, any other transactions must wait to do their own inserts into that table, so that rows inserted by the first transaction receive consecutive primary key values.

The innodb_autoinc_lock_mode configuration option controls the algorithm used for auto-increment locking. It allows you to choose how to trade off between predictable sequences of auto-increment values and maximum concurrency for insert operations.

For more information, see Section 14.6.1.6, “AUTO_INCREMENT Handling in InnoDB”.

Predicate Locks for Spatial Indexes

InnoDB supports SPATIAL indexing of columns containing spatial columns (see Section 11.4.8, “Optimizing Spatial Analysis”).

To handle locking for operations involving SPATIAL indexes, next-key locking does not work well to support REPEATABLE READ or SERIALIZABLE transaction isolation levels. There is no absolute ordering concept in multidimensional data, so it is not clear which is the next key.

To enable support of isolation levels for tables with SPATIAL indexes, InnoDB uses predicate locks. A SPATIAL index contains minimum bounding rectangle (MBR) values, so InnoDB enforces consistent read on the index by setting a predicate lock on the MBR value used for a query. Other transactions cannot insert or modify a row that would match the query condition.

14.7.2 InnoDB Transaction Model

In the InnoDB transaction model, the goal is to combine the best properties of a multi-versioning database with traditional two-phase locking. InnoDB performs locking at the row level and runs queries as nonlocking consistent reads by default, in the style of Oracle. The lock information in InnoDB is stored space-efficiently so that lock escalation is not needed. Typically, several users are permitted to lock every row in InnoDB tables, or any random subset of the rows, without causing InnoDB memory exhaustion.

14.7.2.1 Transaction Isolation Levels

Transaction isolation is one of the foundations of database processing. Isolation is the I in the acronym ACID; the isolation level is the setting that fine-tunes the balance between performance and reliability, consistency, and reproducibility of results when multiple transactions are making changes and performing queries at the same time.

InnoDB offers all four transaction isolation levels described by the SQL:1992 standard: READ UNCOMMITTED, READ COMMITTED, REPEATABLE READ, and SERIALIZABLE. The default isolation level for InnoDB is REPEATABLE READ.

A user can change the isolation level for a single session or for all subsequent connections with the SET TRANSACTION statement. To set the server's default isolation level for all connections, use the --transaction-isolation option on the command line or in an option file. For detailed information about isolation levels and level-setting syntax, see Section 13.3.6, “SET TRANSACTION Statement”.

InnoDB supports each of the transaction isolation levels described here using different locking strategies. You can enforce a high degree of consistency with the default REPEATABLE READ level, for operations on crucial data where ACID compliance is important. Or you can relax the consistency rules with READ COMMITTED or even READ UNCOMMITTED, in situations such as bulk reporting where precise consistency and repeatable results are less important than minimizing the amount of overhead for locking. SERIALIZABLE enforces even stricter rules than REPEATABLE READ, and is used mainly in specialized situations, such as with XA transactions and for troubleshooting issues with concurrency and deadlocks.

The following list describes how MySQL supports the different transaction levels. The list goes from the most commonly used level to the least used.

  • REPEATABLE READ

    This is the default isolation level for InnoDB. Consistent reads within the same transaction read the snapshot established by the first read. This means that if you issue several plain (nonlocking) SELECT statements within the same transaction, these SELECT statements are consistent also with respect to each other. See Section 14.7.2.3, “Consistent Nonlocking Reads”.

    For locking reads (SELECT with FOR UPDATE or LOCK IN SHARE MODE), UPDATE, and DELETE statements, locking depends on whether the statement uses a unique index with a unique search condition, or a range-type search condition.

    • For a unique index with a unique search condition, InnoDB locks only the index record found, not the gap before it.

    • For other search conditions, InnoDB locks the index range scanned, using gap locks or next-key locks to block insertions by other sessions into the gaps covered by the range. For information about gap locks and next-key locks, see Section 14.7.1, “InnoDB Locking”.

  • READ COMMITTED

    Each consistent read, even within the same transaction, sets and reads its own fresh snapshot. For information about consistent reads, see Section 14.7.2.3, “Consistent Nonlocking Reads”.

    For locking reads (SELECT with FOR UPDATE or LOCK IN SHARE MODE), UPDATE statements, and DELETE statements, InnoDB locks only index records, not the gaps before them, and thus permits the free insertion of new records next to locked records. Gap locking is only used for foreign-key constraint checking and duplicate-key checking.

    Because gap locking is disabled, phantom problems may occur, as other sessions can insert new rows into the gaps. For information about phantoms, see Section 14.7.4, “Phantom Rows”.

    Only row-based binary logging is supported with the READ COMMITTED isolation level. If you use READ COMMITTED with binlog_format=MIXED, the server automatically uses row-based logging.

    Using READ COMMITTED has additional effects:

    • For UPDATE or DELETE statements, InnoDB holds locks only for rows that it updates or deletes. Record locks for nonmatching rows are released after MySQL has evaluated the WHERE condition. This greatly reduces the probability of deadlocks, but they can still happen.

    • For UPDATE statements, if a row is already locked, InnoDB performs a semi-consistent read, returning the latest committed version to MySQL so that MySQL can determine whether the row matches the WHERE condition of the UPDATE. If the row matches (must be updated), MySQL reads the row again and this time InnoDB either locks it or waits for a lock on it.

    Consider the following example, beginning with this table:

    CREATE TABLE t (a INT NOT NULL, b INT) ENGINE = InnoDB;
    INSERT INTO t VALUES (1,2),(2,3),(3,2),(4,3),(5,2);
    COMMIT;

    In this case, the table has no indexes, so searches and index scans use the hidden clustered index for record locking (see Section 14.6.2.1, “Clustered and Secondary Indexes”) rather than indexed columns.

    Suppose that one session performs an UPDATE using these statements:

    # Session A
    START TRANSACTION;
    UPDATE t SET b = 5 WHERE b = 3;

    Suppose also that a second session performs an UPDATE by executing this statement following those of the first session:

    # Session B
    UPDATE t SET b = 4 WHERE b = 2;

    As InnoDB executes each UPDATE, it first acquires an exclusive lock for each row that it reads, and then determines whether to modify it. If InnoDB does not modify the row, it releases the lock. Otherwise, InnoDB retains the lock until the end of the transaction. This affects transaction processing as follows.

    When using the default REPEATABLE READ isolation level, the first UPDATE acquires an x-lock on each row that it reads and does not release any of them:

    x-lock(1,2); retain x-lock
    x-lock(2,3); update(2,3) to (2,5); retain x-lock
    x-lock(3,2); retain x-lock
    x-lock(4,3); update(4,3) to (4,5); retain x-lock
    x-lock(5,2); retain x-lock

    The second UPDATE blocks as soon as it tries to acquire any locks (because first update has retained locks on all rows), and does not proceed until the first UPDATE commits or rolls back:

    x-lock(1,2); block and wait for first UPDATE to commit or roll back

    If READ COMMITTED is used instead, the first UPDATE acquires an x-lock on each row that it reads and releases those for rows that it does not modify:

    x-lock(1,2); unlock(1,2)
    x-lock(2,3); update(2,3) to (2,5); retain x-lock
    x-lock(3,2); unlock(3,2)
    x-lock(4,3); update(4,3) to (4,5); retain x-lock
    x-lock(5,2); unlock(5,2)

    For the second UPDATE, InnoDB does a semi-consistent read, returning the latest committed version of each row that it reads to MySQL so that MySQL can determine whether the row matches the WHERE condition of the UPDATE:

    x-lock(1,2); update(1,2) to (1,4); retain x-lock
    x-lock(2,3); unlock(2,3)
    x-lock(3,2); update(3,2) to (3,4); retain x-lock
    x-lock(4,3); unlock(4,3)
    x-lock(5,2); update(5,2) to (5,4); retain x-lock

    However, if the WHERE condition includes an indexed column, and InnoDB uses the index, only the indexed column is considered when taking and retaining record locks. In the following example, the first UPDATE takes and retains an x-lock on each row where b = 2. The second UPDATE blocks when it tries to acquire x-locks on the same records, as it also uses the index defined on column b.

    CREATE TABLE t (a INT NOT NULL, b INT, c INT, INDEX (b)) ENGINE = InnoDB;
    INSERT INTO t VALUES (1,2,3),(2,2,4);
    COMMIT;
    
    # Session A
    START TRANSACTION;
    UPDATE t SET b = 3 WHERE b = 2 AND c = 3;
    
    # Session B
    UPDATE t SET b = 4 WHERE b = 2 AND c = 4;

    The effects of using the READ COMMITTED isolation level are the same as enabling the deprecated innodb_locks_unsafe_for_binlog configuration option, with these exceptions:

    • Enabling innodb_locks_unsafe_for_binlog is a global setting and affects all sessions, whereas the isolation level can be set globally for all sessions, or individually per session.

    • innodb_locks_unsafe_for_binlog can be set only at server startup, whereas the isolation level can be set at startup or changed at runtime.

    READ COMMITTED therefore offers finer and more flexible control than innodb_locks_unsafe_for_binlog.

  • READ UNCOMMITTED

    SELECT statements are performed in a nonlocking fashion, but a possible earlier version of a row might be used. Thus, using this isolation level, such reads are not consistent. This is also called a dirty read. Otherwise, this isolation level works like READ COMMITTED.

  • SERIALIZABLE

    This level is like REPEATABLE READ, but InnoDB implicitly converts all plain SELECT statements to SELECT ... LOCK IN SHARE MODE if autocommit is disabled. If autocommit is enabled, the SELECT is its own transaction. It therefore is known to be read only and can be serialized if performed as a consistent (nonlocking) read and need not block for other transactions. (To force a plain SELECT to block if other transactions have modified the selected rows, disable autocommit.)

14.7.2.2 autocommit, Commit, and Rollback

In InnoDB, all user activity occurs inside a transaction. If autocommit mode is enabled, each SQL statement forms a single transaction on its own. By default, MySQL starts the session for each new connection with autocommit enabled, so MySQL does a commit after each SQL statement if that statement did not return an error. If a statement returns an error, the commit or rollback behavior depends on the error. See Section 14.22.4, “InnoDB Error Handling”.

A session that has autocommit enabled can perform a multiple-statement transaction by starting it with an explicit START TRANSACTION or BEGIN statement and ending it with a COMMIT or ROLLBACK statement. See Section 13.3.1, “START TRANSACTION, COMMIT, and ROLLBACK Statements”.

If autocommit mode is disabled within a session with SET autocommit = 0, the session always has a transaction open. A COMMIT or ROLLBACK statement ends the current transaction and a new one starts.

If a session that has autocommit disabled ends without explicitly committing the final transaction, MySQL rolls back that transaction.

Some statements implicitly end a transaction, as if you had done a COMMIT before executing the statement. For details, see Section 13.3.3, “Statements That Cause an Implicit Commit”.

A COMMIT means that the changes made in the current transaction are made permanent and become visible to other sessions. A ROLLBACK statement, on the other hand, cancels all modifications made by the current transaction. Both COMMIT and ROLLBACK release all InnoDB locks that were set during the current transaction.

Grouping DML Operations with Transactions

By default, connection to the MySQL server begins with autocommit mode enabled, which automatically commits every SQL statement as you execute it. This mode of operation might be unfamiliar if you have experience with other database systems, where it is standard practice to issue a sequence of DML statements and commit them or roll them back all together.

To use multiple-statement transactions, switch autocommit off with the SQL statement SET autocommit = 0 and end each transaction with COMMIT or ROLLBACK as appropriate. To leave autocommit on, begin each transaction with START TRANSACTION and end it with COMMIT or ROLLBACK. The following example shows two transactions. The first is committed; the second is rolled back.

shell> mysql test
mysql> CREATE TABLE customer (a INT, b CHAR (20), INDEX (a));
Query OK, 0 rows affected (0.00 sec)
mysql> -- Do a transaction with autocommit turned on.
mysql> START TRANSACTION;
Query OK, 0 rows affected (0.00 sec)
mysql> INSERT INTO customer VALUES (10, 'Heikki');
Query OK, 1 row affected (0.00 sec)
mysql> COMMIT;
Query OK, 0 rows affected (0.00 sec)
mysql> -- Do another transaction with autocommit turned off.
mysql> SET autocommit=0;
Query OK, 0 rows affected (0.00 sec)
mysql> INSERT INTO customer VALUES (15, 'John');
Query OK, 1 row affected (0.00 sec)
mysql> INSERT INTO customer VALUES (20, 'Paul');
Query OK, 1 row affected (0.00 sec)
mysql> DELETE FROM customer WHERE b = 'Heikki';
Query OK, 1 row affected (0.00 sec)
mysql> -- Now we undo those last 2 inserts and the delete.
mysql> ROLLBACK;
Query OK, 0 rows affected (0.00 sec)
mysql> SELECT * FROM customer;
+------+--------+
| a    | b      |
+------+--------+
|   10 | Heikki |
+------+--------+
1 row in set (0.00 sec)
mysql>
Transactions in Client-Side Languages

In APIs such as PHP, Perl DBI, JDBC, ODBC, or the standard C call interface of MySQL, you can send transaction control statements such as COMMIT to the MySQL server as strings just like any other SQL statements such as SELECT or INSERT. Some APIs also offer separate special transaction commit and rollback functions or methods.

14.7.2.3 Consistent Nonlocking Reads

A consistent read means that InnoDB uses multi-versioning to present to a query a snapshot of the database at a point in time. The query sees the changes made by transactions that committed before that point of time, and no changes made by later or uncommitted transactions. The exception to this rule is that the query sees the changes made by earlier statements within the same transaction. This exception causes the following anomaly: If you update some rows in a table, a SELECT sees the latest version of the updated rows, but it might also see older versions of any rows. If other sessions simultaneously update the same table, the anomaly means that you might see the table in a state that never existed in the database.

If the transaction isolation level is REPEATABLE READ (the default level), all consistent reads within the same transaction read the snapshot established by the first such read in that transaction. You can get a fresher snapshot for your queries by committing the current transaction and after that issuing new queries.

With READ COMMITTED isolation level, each consistent read within a transaction sets and reads its own fresh snapshot.

Consistent read is the default mode in which InnoDB processes SELECT statements in READ COMMITTED and REPEATABLE READ isolation levels. A consistent read does not set any locks on the tables it accesses, and therefore other sessions are free to modify those tables at the same time a consistent read is being performed on the table.

Suppose that you are running in the default REPEATABLE READ isolation level. When you issue a consistent read (that is, an ordinary SELECT statement), InnoDB gives your transaction a timepoint according to which your query sees the database. If another transaction deletes a row and commits after your timepoint was assigned, you do not see the row as having been deleted. Inserts and updates are treated similarly.

Note

The snapshot of the database state applies to SELECT statements within a transaction, not necessarily to DML statements. If you insert or modify some rows and then commit that transaction, a DELETE or UPDATE statement issued from another concurrent REPEATABLE READ transaction could affect those just-committed rows, even though the session could not query them. If a transaction does update or delete rows committed by a different transaction, those changes do become visible to the current transaction. For example, you might encounter a situation like the following:

SELECT COUNT(c1) FROM t1 WHERE c1 = 'xyz';
-- Returns 0: no rows match.
DELETE FROM t1 WHERE c1 = 'xyz';
-- Deletes several rows recently committed by other transaction.

SELECT COUNT(c2) FROM t1 WHERE c2 = 'abc';
-- Returns 0: no rows match.
UPDATE t1 SET c2 = 'cba' WHERE c2 = 'abc';
-- Affects 10 rows: another txn just committed 10 rows with 'abc' values.
SELECT COUNT(c2) FROM t1 WHERE c2 = 'cba';
-- Returns 10: this txn can now see the rows it just updated.

You can advance your timepoint by committing your transaction and then doing another SELECT or START TRANSACTION WITH CONSISTENT SNAPSHOT.

This is called multi-versioned concurrency control.

In the following example, session A sees the row inserted by B only when B has committed the insert and A has committed as well, so that the timepoint is advanced past the commit of B.

             Session A              Session B

           SET autocommit=0;      SET autocommit=0;
time
|          SELECT * FROM t;
|          empty set
|                                 INSERT INTO t VALUES (1, 2);
|
v          SELECT * FROM t;
           empty set
                                  COMMIT;

           SELECT * FROM t;
           empty set

           COMMIT;

           SELECT * FROM t;
           ---------------------
           |    1    |    2    |
           ---------------------

If you want to see the freshest state of the database, use either the READ COMMITTED isolation level or a locking read:

SELECT * FROM t FOR SHARE;

With READ COMMITTED isolation level, each consistent read within a transaction sets and reads its own fresh snapshot. With LOCK IN SHARE MODE, a locking read occurs instead: A SELECT blocks until the transaction containing the freshest rows ends (see Section 14.7.2.4, “Locking Reads”).

Consistent read does not work over certain DDL statements:

  • Consistent read does not work over DROP TABLE, because MySQL cannot use a table that has been dropped and InnoDB destroys the table.

  • Consistent read does not work over ALTER TABLE, because that statement makes a temporary copy of the original table and deletes the original table when the temporary copy is built. When you reissue a consistent read within a transaction, rows in the new table are not visible because those rows did not exist when the transaction's snapshot was taken. In this case, the transaction returns an error: ER_TABLE_DEF_CHANGED, Table definition has changed, please retry transaction.

The type of read varies for selects in clauses like INSERT INTO ... SELECT, UPDATE ... (SELECT), and CREATE TABLE ... SELECT that do not specify FOR UPDATE or LOCK IN SHARE MODE:

14.7.2.4 Locking Reads

If you query data and then insert or update related data within the same transaction, the regular SELECT statement does not give enough protection. Other transactions can update or delete the same rows you just queried. InnoDB supports two types of locking reads that offer extra safety:

  • SELECT ... LOCK IN SHARE MODE

    Sets a shared mode lock on any rows that are read. Other sessions can read the rows, but cannot modify them until your transaction commits. If any of these rows were changed by another transaction that has not yet committed, your query waits until that transaction ends and then uses the latest values.

  • SELECT ... FOR UPDATE

    For index records the search encounters, locks the rows and any associated index entries, the same as if you issued an UPDATE statement for those rows. Other transactions are blocked from updating those rows, from doing SELECT ... LOCK IN SHARE MODE, or from reading the data in certain transaction isolation levels. Consistent reads ignore any locks set on the records that exist in the read view. (Old versions of a record cannot be locked; they are reconstructed by applying undo logs on an in-memory copy of the record.)

These clauses are primarily useful when dealing with tree-structured or graph-structured data, either in a single table or split across multiple tables. You traverse edges or tree branches from one place to another, while reserving the right to come back and change any of these pointer values.

All locks set by LOCK IN SHARE MODE and FOR UPDATE queries are released when the transaction is committed or rolled back.

Note

Locking reads are only possible when autocommit is disabled (either by beginning transaction with START TRANSACTION or by setting autocommit to 0.

A locking read clause in an outer statement does not lock the rows of a table in a nested subquery unless a locking read clause is also specified in the subquery. For example, the following statement does not lock rows in table t2.

SELECT * FROM t1 WHERE c1 = (SELECT c1 FROM t2) FOR UPDATE;

To lock rows in table t2, add a locking read clause to the subquery:

SELECT * FROM t1 WHERE c1 = (SELECT c1 FROM t2 FOR UPDATE) FOR UPDATE;
Locking Read Examples

Suppose that you want to insert a new row into a table child, and make sure that the child row has a parent row in table parent. Your application code can ensure referential integrity throughout this sequence of operations.

First, use a consistent read to query the table PARENT and verify that the parent row exists. Can you safely insert the child row to table CHILD? No, because some other session could delete the parent row in the moment between your SELECT and your INSERT, without you being aware of it.

To avoid this potential issue, perform the SELECT using LOCK IN SHARE MODE:

SELECT * FROM parent WHERE NAME = 'Jones' LOCK IN SHARE MODE;

After the LOCK IN SHARE MODE query returns the parent 'Jones', you can safely add the child record to the CHILD table and commit the transaction. Any transaction that tries to acquire an exclusive lock in the applicable row in the PARENT table waits until you are finished, that is, until the data in all tables is in a consistent state.

For another example, consider an integer counter field in a table CHILD_CODES, used to assign a unique identifier to each child added to table CHILD. Do not use either consistent read or a shared mode read to read the present value of the counter, because two users of the database could see the same value for the counter, and a duplicate-key error occurs if two transactions attempt to add rows with the same identifier to the CHILD table.

Here, LOCK IN SHARE MODE is not a good solution because if two users read the counter at the same time, at least one of them ends up in deadlock when it attempts to update the counter.

To implement reading and incrementing the counter, first perform a locking read of the counter using FOR UPDATE, and then increment the counter. For example:

SELECT counter_field FROM child_codes FOR UPDATE;
UPDATE child_codes SET counter_field = counter_field + 1;

A SELECT ... FOR UPDATE reads the latest available data, setting exclusive locks on each row it reads. Thus, it sets the same locks a searched SQL UPDATE would set on the rows.

The preceding description is merely an example of how SELECT ... FOR UPDATE works. In MySQL, the specific task of generating a unique identifier actually can be accomplished using only a single access to the table:

UPDATE child_codes SET counter_field = LAST_INSERT_ID(counter_field + 1);
SELECT LAST_INSERT_ID();

The SELECT statement merely retrieves the identifier information (specific to the current connection). It does not access any table.

14.7.3 Locks Set by Different SQL Statements in InnoDB

A locking read, an UPDATE, or a DELETE generally set record locks on every index record that is scanned in the processing of the SQL statement. It does not matter whether there are WHERE conditions in the statement that would exclude the row. InnoDB does not remember the exact WHERE condition, but only knows which index ranges were scanned. The locks are normally next-key locks that also block inserts into the gap immediately before the record. However, gap locking can be disabled explicitly, which causes next-key locking not to be used. For more information, see Section 14.7.1, “InnoDB Locking”. The transaction isolation level also can affect which locks are set; see Section 14.7.2.1, “Transaction Isolation Levels”.

If a secondary index is used in a search and index record locks to be set are exclusive, InnoDB also retrieves the corresponding clustered index records and sets locks on them.

If you have no indexes suitable for your statement and MySQL must scan the entire table to process the statement, every row of the table becomes locked, which in turn blocks all inserts by other users to the table. It is important to create good indexes so that your queries do not unnecessarily scan many rows.

InnoDB sets specific types of locks as follows.

  • SELECT ... FROM is a consistent read, reading a snapshot of the database and setting no locks unless the transaction isolation level is set to SERIALIZABLE. For SERIALIZABLE level, the search sets shared next-key locks on the index records it encounters. However, only an index record lock is required for statements that lock rows using a unique index to search for a unique row.

  • For SELECT ... FOR UPDATE or SELECT ... LOCK IN SHARE MODE, locks are acquired for scanned rows, and expected to be released for rows that do not qualify for inclusion in the result set (for example, if they do not meet the criteria given in the WHERE clause). However, in some cases, rows might not be unlocked immediately because the relationship between a result row and its original source is lost during query execution. For example, in a UNION, scanned (and locked) rows from a table might be inserted into a temporary table before evaluation whether they qualify for the result set. In this circumstance, the relationship of the rows in the temporary table to the rows in the original table is lost and the latter rows are not unlocked until the end of query execution.

  • SELECT ... LOCK IN SHARE MODE sets shared next-key locks on all index records the search encounters. However, only an index record lock is required for statements that lock rows using a unique index to search for a unique row.

  • SELECT ... FOR UPDATE sets an exclusive next-key lock on every record the search encounters. However, only an index record lock is required for statements that lock rows using a unique index to search for a unique row.

    For index records the search encounters, SELECT ... FOR UPDATE blocks other sessions from doing SELECT ... LOCK IN SHARE MODE or from reading in certain transaction isolation levels. Consistent reads ignore any locks set on the records that exist in the read view.

  • UPDATE ... WHERE ... sets an exclusive next-key lock on every record the search encounters. However, only an index record lock is required for statements that lock rows using a unique index to search for a unique row.

  • When UPDATE modifies a clustered index record, implicit locks are taken on affected secondary index records. The UPDATE operation also takes shared locks on affected secondary index records when performing duplicate check scans prior to inserting new secondary index records, and when inserting new secondary index records.

  • DELETE FROM ... WHERE ... sets an exclusive next-key lock on every record the search encounters. However, only an index record lock is required for statements that lock rows using a unique index to search for a unique row.

  • INSERT sets an exclusive lock on the inserted row. This lock is an index-record lock, not a next-key lock (that is, there is no gap lock) and does not prevent other sessions from inserting into the gap before the inserted row.

    Prior to inserting the row, a type of gap lock called an insert intention gap lock is set. This lock signals the intent to insert in such a way that multiple transactions inserting into the same index gap need not wait for each other if they are not inserting at the same position within the gap. Suppose that there are index records with values of 4 and 7. Separate transactions that attempt to insert values of 5 and 6 each lock the gap between 4 and 7 with insert intention locks prior to obtaining the exclusive lock on the inserted row, but do not block each other because the rows are nonconflicting.

    If a duplicate-key error occurs, a shared lock on the duplicate index record is set. This use of a shared lock can result in deadlock should there be multiple sessions trying to insert the same row if another session already has an exclusive lock. This can occur if another session deletes the row. Suppose that an InnoDB table t1 has the following structure:

    CREATE TABLE t1 (i INT, PRIMARY KEY (i)) ENGINE = InnoDB;

    Now suppose that three sessions perform the following operations in order:

    Session 1:

    START TRANSACTION;
    INSERT INTO t1 VALUES(1);

    Session 2:

    START TRANSACTION;
    INSERT INTO t1 VALUES(1);

    Session 3:

    START TRANSACTION;
    INSERT INTO t1 VALUES(1);

    Session 1:

    ROLLBACK;

    The first operation by session 1 acquires an exclusive lock for the row. The operations by sessions 2 and 3 both result in a duplicate-key error and they both request a shared lock for the row. When session 1 rolls back, it releases its exclusive lock on the row and the queued shared lock requests for sessions 2 and 3 are granted. At this point, sessions 2 and 3 deadlock: Neither can acquire an exclusive lock for the row because of the shared lock held by the other.

    A similar situation occurs if the table already contains a row with key value 1 and three sessions perform the following operations in order:

    Session 1:

    START TRANSACTION;
    DELETE FROM t1 WHERE i = 1;

    Session 2:

    START TRANSACTION;
    INSERT INTO t1 VALUES(1);

    Session 3:

    START TRANSACTION;
    INSERT INTO t1 VALUES(1);

    Session 1:

    COMMIT;

    The first operation by session 1 acquires an exclusive lock for the row. The operations by sessions 2 and 3 both result in a duplicate-key error and they both request a shared lock for the row. When session 1 commits, it releases its exclusive lock on the row and the queued shared lock requests for sessions 2 and 3 are granted. At this point, sessions 2 and 3 deadlock: Neither can acquire an exclusive lock for the row because of the shared lock held by the other.

  • INSERT ... ON DUPLICATE KEY UPDATE differs from a simple INSERT in that an exclusive lock rather than a shared lock is placed on the row to be updated when a duplicate-key error occurs. An exclusive index-record lock is taken for a duplicate primary key value. An exclusive next-key lock is taken for a duplicate unique key value.

  • REPLACE is done like an INSERT if there is no collision on a unique key. Otherwise, an exclusive next-key lock is placed on the row to be replaced.

  • INSERT INTO T SELECT ... FROM S WHERE ... sets an exclusive index record lock (without a gap lock) on each row inserted into T. If the transaction isolation level is READ COMMITTED, or innodb_locks_unsafe_for_binlog is enabled and the transaction isolation level is not SERIALIZABLE, InnoDB does the search on S as a consistent read (no locks). Otherwise, InnoDB sets shared next-key locks on rows from S. InnoDB has to set locks in the latter case: During roll-forward recovery using a statement-based binary log, every SQL statement must be executed in exactly the same way it was done originally.

    CREATE TABLE ... SELECT ... performs the SELECT with shared next-key locks or as a consistent read, as for INSERT ... SELECT.

    When a SELECT is used in the constructs REPLACE INTO t SELECT ... FROM s WHERE ... or UPDATE t ... WHERE col IN (SELECT ... FROM s ...), InnoDB sets shared next-key locks on rows from table s.

  • InnoDB sets an exclusive lock on the end of the index associated with the AUTO_INCREMENT column while initializing a previously specified AUTO_INCREMENT column on a table.

    With innodb_autoinc_lock_mode=0, InnoDB uses a special AUTO-INC table lock mode where the lock is obtained and held to the end of the current SQL statement (not to the end of the entire transaction) while accessing the auto-increment counter. Other clients cannot insert into the table while the AUTO-INC table lock is held. The same behavior occurs for bulk inserts with innodb_autoinc_lock_mode=1. Table-level AUTO-INC locks are not used with innodb_autoinc_lock_mode=2. For more information, See Section 14.6.1.6, “AUTO_INCREMENT Handling in InnoDB”.

    InnoDB fetches the value of a previously initialized AUTO_INCREMENT column without setting any locks.

  • If a FOREIGN KEY constraint is defined on a table, any insert, update, or delete that requires the constraint condition to be checked sets shared record-level locks on the records that it looks at to check the constraint. InnoDB also sets these locks in the case where the constraint fails.

  • LOCK TABLES sets table locks, but it is the higher MySQL layer above the InnoDB layer that sets these locks. InnoDB is aware of table locks if innodb_table_locks = 1 (the default) and autocommit = 0, and the MySQL layer above InnoDB knows about row-level locks.

    Otherwise, InnoDB's automatic deadlock detection cannot detect deadlocks where such table locks are involved. Also, because in this case the higher MySQL layer does not know about row-level locks, it is possible to get a table lock on a table where another session currently has row-level locks. However, this does not endanger transaction integrity, as discussed in Section 14.7.5.2, “Deadlock Detection and Rollback”.

  • LOCK TABLES acquires two locks on each table if innodb_table_locks=1 (the default). In addition to a table lock on the MySQL layer, it also acquires an InnoDB table lock. Versions of MySQL before 4.1.2 did not acquire InnoDB table locks; the old behavior can be selected by setting innodb_table_locks=0. If no InnoDB table lock is acquired, LOCK TABLES completes even if some records of the tables are being locked by other transactions.

    In MySQL 5.7, innodb_table_locks=0 has no effect for tables locked explicitly with LOCK TABLES ... WRITE. It does have an effect for tables locked for read or write by LOCK TABLES ... WRITE implicitly (for example, through triggers) or by LOCK TABLES ... READ.

  • All InnoDB locks held by a transaction are released when the transaction is committed or aborted. Thus, it does not make much sense to invoke LOCK TABLES on InnoDB tables in autocommit=1 mode because the acquired InnoDB table locks would be released immediately.

  • You cannot lock additional tables in the middle of a transaction because LOCK TABLES performs an implicit COMMIT and UNLOCK TABLES.

14.7.4 Phantom Rows

The so-called phantom problem occurs within a transaction when the same query produces different sets of rows at different times. For example, if a SELECT is executed twice, but returns a row the second time that was not returned the first time, the row is a phantom row.

Suppose that there is an index on the id column of the child table and that you want to read and lock all rows from the table having an identifier value larger than 100, with the intention of updating some column in the selected rows later:

SELECT * FROM child WHERE id > 100 FOR UPDATE;

The query scans the index starting from the first record where id is bigger than 100. Let the table contain rows having id values of 90 and 102. If the locks set on the index records in the scanned range do not lock out inserts made in the gaps (in this case, the gap between 90 and 102), another session can insert a new row into the table with an id of 101. If you were to execute the same SELECT within the same transaction, you would see a new row with an id of 101 (a phantom) in the result set returned by the query. If we regard a set of rows as a data item, the new phantom child would violate the isolation principle of transactions that a transaction should be able to run so that the data it has read does not change during the transaction.

To prevent phantoms, InnoDB uses an algorithm called next-key locking that combines index-row locking with gap locking. InnoDB performs row-level locking in such a way that when it searches or scans a table index, it sets shared or exclusive locks on the index records it encounters. Thus, the row-level locks are actually index-record locks. In addition, a next-key lock on an index record also affects the gap before that index record. That is, a next-key lock is an index-record lock plus a gap lock on the gap preceding the index record. If one session has a shared or exclusive lock on record R in an index, another session cannot insert a new index record in the gap immediately before R in the index order.

When InnoDB scans an index, it can also lock the gap after the last record in the index. Just that happens in the preceding example: To prevent any insert into the table where id would be bigger than 100, the locks set by InnoDB include a lock on the gap following id value 102.

You can use next-key locking to implement a uniqueness check in your application: If you read your data in share mode and do not see a duplicate for a row you are going to insert, then you can safely insert your row and know that the next-key lock set on the successor of your row during the read prevents anyone meanwhile inserting a duplicate for your row. Thus, the next-key locking enables you to lock the nonexistence of something in your table.

Gap locking can be disabled as discussed in Section 14.7.1, “InnoDB Locking”. This may cause phantom problems because other sessions can insert new rows into the gaps when gap locking is disabled.

14.7.5 Deadlocks in InnoDB

A deadlock is a situation where different transactions are unable to proceed because each holds a lock that the other needs. Because both transactions are waiting for a resource to become available, neither ever release the locks it holds.

A deadlock can occur when transactions lock rows in multiple tables (through statements such as UPDATE or SELECT ... FOR UPDATE), but in the opposite order. A deadlock can also occur when such statements lock ranges of index records and gaps, with each transaction acquiring some locks but not others due to a timing issue. For a deadlock example, see Section 14.7.5.1, “An InnoDB Deadlock Example”.

To reduce the possibility of deadlocks, use transactions rather than LOCK TABLES statements; keep transactions that insert or update data small enough that they do not stay open for long periods of time; when different transactions update multiple tables or large ranges of rows, use the same order of operations (such as SELECT ... FOR UPDATE) in each transaction; create indexes on the columns used in SELECT ... FOR UPDATE and UPDATE ... WHERE statements. The possibility of deadlocks is not affected by the isolation level, because the isolation level changes the behavior of read operations, while deadlocks occur because of write operations. For more information about avoiding and recovering from deadlock conditions, see Section 14.7.5.3, “How to Minimize and Handle Deadlocks”.

When deadlock detection is enabled (the default) and a deadlock does occur, InnoDB detects the condition and rolls back one of the transactions (the victim). If deadlock detection is disabled using the innodb_deadlock_detect configuration option, InnoDB relies on the innodb_lock_wait_timeout setting to roll back transactions in case of a deadlock. Thus, even if your application logic is correct, you must still handle the case where a transaction must be retried. To see the last deadlock in an InnoDB user transaction, use the SHOW ENGINE INNODB STATUS command. If frequent deadlocks highlight a problem with transaction structure or application error handling, run with the innodb_print_all_deadlocks setting enabled to print information about all deadlocks to the mysqld error log. For more information about how deadlocks are automatically detected and handled, see Section 14.7.5.2, “Deadlock Detection and Rollback”.

14.7.5.1 An InnoDB Deadlock Example

The following example illustrates how an error can occur when a lock request would cause a deadlock. The example involves two clients, A and B.

First, client A creates a table containing one row, and then begins a transaction. Within the transaction, A obtains an S lock on the row by selecting it in share mode:

mysql> CREATE TABLE t (i INT) ENGINE = InnoDB;
Query OK, 0 rows affected (1.07 sec)

mysql> INSERT INTO t (i) VALUES(1);
Query OK, 1 row affected (0.09 sec)

mysql> START TRANSACTION;
Query OK, 0 rows affected (0.00 sec)

mysql> SELECT * FROM t WHERE i = 1 LOCK IN SHARE MODE;
+------+
| i    |
+------+
|    1 |
+------+

Next, client B begins a transaction and attempts to delete the row from the table:

mysql> START TRANSACTION;
Query OK, 0 rows affected (0.00 sec)

mysql> DELETE FROM t WHERE i = 1;

The delete operation requires an X lock. The lock cannot be granted because it is incompatible with the S lock that client A holds, so the request goes on the queue of lock requests for the row and client B blocks.

Finally, client A also attempts to delete the row from the table:

mysql> DELETE FROM t WHERE i = 1;
ERROR 1213 (40001): Deadlock found when trying to get lock;
try restarting transaction

Deadlock occurs here because client A needs an X lock to delete the row. However, that lock request cannot be granted because client B already has a request for an X lock and is waiting for client A to release its S lock. Nor can the S lock held by A be upgraded to an X lock because of the prior request by B for an X lock. As a result, InnoDB generates an error for one of the clients and releases its locks. The client returns this error:

ERROR 1213 (40001): Deadlock found when trying to get lock;
try restarting transaction

At that point, the lock request for the other client can be granted and it deletes the row from the table.

14.7.5.2 Deadlock Detection and Rollback

When deadlock detection is enabled (the default), InnoDB automatically detects transaction deadlocks and rolls back a transaction or transactions to break the deadlock. InnoDB tries to pick small transactions to roll back, where the size of a transaction is determined by the number of rows inserted, updated, or deleted.

InnoDB is aware of table locks if innodb_table_locks = 1 (the default) and autocommit = 0, and the MySQL layer above it knows about row-level locks. Otherwise, InnoDB cannot detect deadlocks where a table lock set by a MySQL LOCK TABLES statement or a lock set by a storage engine other than InnoDB is involved. Resolve these situations by setting the value of the innodb_lock_wait_timeout system variable.

When InnoDB performs a complete rollback of a transaction, all locks set by the transaction are released. However, if just a single SQL statement is rolled back as a result of an error, some of the locks set by the statement may be preserved. This happens because InnoDB stores row locks in a format such that it cannot know afterward which lock was set by which statement.

If a SELECT calls a stored function in a transaction, and a statement within the function fails, that statement rolls back. Furthermore, if ROLLBACK is executed after that, the entire transaction rolls back.

If the LATEST DETECTED DEADLOCK section of InnoDB Monitor output includes a message stating, TOO DEEP OR LONG SEARCH IN THE LOCK TABLE WAITS-FOR GRAPH, WE WILL ROLL BACK FOLLOWING TRANSACTION, this indicates that the number of transactions on the wait-for list has reached a limit of 200. A wait-for list that exceeds 200 transactions is treated as a deadlock and the transaction attempting to check the wait-for list is rolled back. The same error may also occur if the locking thread must look at more than 1,000,000 locks owned by transactions on the wait-for list.

For techniques to organize database operations to avoid deadlocks, see Section 14.7.5, “Deadlocks in InnoDB”.

Disabling Deadlock Detection

On high concurrency systems, deadlock detection can cause a slowdown when numerous threads wait for the same lock. At times, it may be more efficient to disable deadlock detection and rely on the innodb_lock_wait_timeout setting for transaction rollback when a deadlock occurs. Deadlock detection can be disabled using the innodb_deadlock_detect configuration option.

14.7.5.3 How to Minimize and Handle Deadlocks

This section builds on the conceptual information about deadlocks in Section 14.7.5.2, “Deadlock Detection and Rollback”. It explains how to organize database operations to minimize deadlocks and the subsequent error handling required in applications.

Deadlocks are a classic problem in transactional databases, but they are not dangerous unless they are so frequent that you cannot run certain transactions at all. Normally, you must write your applications so that they are always prepared to re-issue a transaction if it gets rolled back because of a deadlock.

InnoDB uses automatic row-level locking. You can get deadlocks even in the case of transactions that just insert or delete a single row. That is because these operations are not really atomic; they automatically set locks on the (possibly several) index records of the row inserted or deleted.

You can cope with deadlocks and reduce the likelihood of their occurrence with the following techniques:

  • At any time, issue the SHOW ENGINE INNODB STATUS command to determine the cause of the most recent deadlock. That can help you to tune your application to avoid deadlocks.

  • If frequent deadlock warnings cause concern, collect more extensive debugging information by enabling the innodb_print_all_deadlocks configuration option. Information about each deadlock, not just the latest one, is recorded in the MySQL error log. Disable this option when you are finished debugging.

  • Always be prepared to re-issue a transaction if it fails due to deadlock. Deadlocks are not dangerous. Just try again.

  • Keep transactions small and short in duration to make them less prone to collision.

  • Commit transactions immediately after making a set of related changes to make them less prone to collision. In particular, do not leave an interactive mysql session open for a long time with an uncommitted transaction.

  • If you use locking reads (SELECT ... FOR UPDATE or SELECT ... LOCK IN SHARE MODE), try using a lower isolation level such as READ COMMITTED.

  • When modifying multiple tables within a transaction, or different sets of rows in the same table, do those operations in a consistent order each time. Then transactions form well-defined queues and do not deadlock. For example, organize database operations into functions within your application, or call stored routines, rather than coding multiple similar sequences of INSERT, UPDATE, and DELETE statements in different places.

  • Add well-chosen indexes to your tables. Then your queries need to scan fewer index records and consequently set fewer locks. Use EXPLAIN SELECT to determine which indexes the MySQL server regards as the most appropriate for your queries.

  • Use less locking. If you can afford to permit a SELECT to return data from an old snapshot, do not add the clause FOR UPDATE or LOCK IN SHARE MODE to it. Using the READ COMMITTED isolation level is good here, because each consistent read within the same transaction reads from its own fresh snapshot.

  • If nothing else helps, serialize your transactions with table-level locks. The correct way to use LOCK TABLES with transactional tables, such as InnoDB tables, is to begin a transaction with SET autocommit = 0 (not START TRANSACTION) followed by LOCK TABLES, and to not call UNLOCK TABLES until you commit the transaction explicitly. For example, if you need to write to table t1 and read from table t2, you can do this:

    SET autocommit=0;
    LOCK TABLES t1 WRITE, t2 READ, ...;... do something with tables t1 and t2 here ...
    COMMIT;
    UNLOCK TABLES;
    

    Table-level locks prevent concurrent updates to the table, avoiding deadlocks at the expense of less responsiveness for a busy system.

  • Another way to serialize transactions is to create an auxiliary semaphore table that contains just a single row. Have each transaction update that row before accessing other tables. In that way, all transactions happen in a serial fashion. Note that the InnoDB instant deadlock detection algorithm also works in this case, because the serializing lock is a row-level lock. With MySQL table-level locks, the timeout method must be used to resolve deadlocks.

14.8 InnoDB Configuration

This section provides configuration information and procedures for InnoDB initialization, startup, and various components and features of the InnoDB storage engine. For information about optimizing database operations for InnoDB tables, see Section 8.5, “Optimizing for InnoDB Tables”.

14.8.1 InnoDB Startup Configuration

The first decisions to make about InnoDB configuration involve the configuration of data files, log files, page size, and memory buffers. It is recommended that you define data file, log file, and page size configuration before creating the InnoDB instance. Modifying data file or log file configuration after the InnoDB instance is created may involve a non-trivial procedure, and page size can only be defined when the InnoDB instance is first initialized.

In addition to these topics, this section provides information about specifying InnoDB options in a configuration file, viewing InnoDB initialization information, and important storage considerations.

Specifying Options in a MySQL Configuration File

Because MySQL uses data file, log file, and page size configuration settings to initialize the InnoDB instance, it is recommended that you define these settings in a configuration file that MySQL reads at startup, prior to initializing InnoDB for the first time. InnoDB is initialized when the MySQL server is started, and the first initialization of InnoDB normally occurs the first time you start the MySQL server.

You can place InnoDB options in the [mysqld] group of any option file that your server reads when it starts. The locations of MySQL option files are described in Section 4.2.2.2, “Using Option Files”.

To make sure that mysqld reads options only from a specific file, use the --defaults-file option as the first option on the command line when starting the server:

mysqld --defaults-file=path_to_configuration_file

Viewing InnoDB Initialization Information

To view InnoDB initialization information during startup, start mysqld from a command prompt. When mysqld is started from a command prompt, initialization information is printed to the console.

For example, on Windows, if mysqld is located in C:\Program Files\MySQL\MySQL Server 5.7\bin, start the MySQL server like this:

C:\> "C:\Program Files\MySQL\MySQL Server 5.7\bin\mysqld" --console

On Unix-like systems, mysqld is located in the bin directory of your MySQL installation:

shell> bin/mysqld --user=mysql &

If you do not send server output to the console, check the error log after startup to see the initialization information InnoDB printed during the startup process.

For information about starting MySQL using other methods, see Section 2.10.5, “Starting and Stopping MySQL Automatically”.

Note

InnoDB does not open all user tables and associated data files at startup. However, InnoDB does check for the existence of tablespace files (*.ibd files) that are referenced in the data dictionary. If a tablespace file is not found, InnoDB logs an error and continues the startup sequence. Tablespace files that are referenced in the redo log may be opened during crash recovery for redo application.

Important Storage Considerations

Review the following storage-related considerations before proceeding with your startup configuration.

  • In some cases, database performance improves if the data is not all placed on the same physical disk. Putting log files on a different disk from data is very often beneficial for performance. For example, you can place system tablespace data files and log files on different disks. You can also use raw disk partitions (raw devices) for InnoDB data files, which may speed up I/O. See Using Raw Disk Partitions for the System Tablespace.

  • InnoDB is a transaction-safe (ACID compliant) storage engine for MySQL that has commit, rollback, and crash-recovery capabilities to protect user data. However, it cannot do so if the underlying operating system or hardware does not work as advertised. Many operating systems or disk subsystems may delay or reorder write operations to improve performance. On some operating systems, the very fsync() system call that should wait until all unwritten data for a file has been flushed might actually return before the data has been flushed to stable storage. Because of this, an operating system crash or a power outage may destroy recently committed data, or in the worst case, even corrupt the database because of write operations having been reordered. If data integrity is important to you, perform some pull-the-plug tests before using anything in production. On macOS, InnoDB uses a special fcntl() file flush method. Under Linux, it is advisable to disable the write-back cache.

    On ATA/SATA disk drives, a command such hdparm -W0 /dev/hda may work to disable the write-back cache. Beware that some drives or disk controllers may be unable to disable the write-back cache.

  • With regard to InnoDB recovery capabilities that protect user data, InnoDB uses a file flush technique involving a structure called the doublewrite buffer, which is enabled by default (innodb_doublewrite=ON). The doublewrite buffer adds safety to recovery following a crash or power outage, and improves performance on most varieties of Unix by reducing the need for fsync() operations. It is recommended that the innodb_doublewrite option remains enabled if you are concerned with data integrity or possible failures. For additional information about the doublewrite buffer, see Section 14.12.1, “InnoDB Disk I/O”.

  • Before using NFS with InnoDB, review potential issues outlined in Using NFS with MySQL.

  • Running MySQL server on a 4K sector hard drive on Windows is not supported with innodb_flush_method=async_unbuffered, which is the default setting. The workaround is to use innodb_flush_method=normal.

System Tablespace Data File Configuration

The innodb_data_file_path startup option defines the name, size, and attributes of InnoDB system tablespace data files. If you do not configure this option prior to initializing the MySQL server, the default behavior is to create a single auto-extending data file, slightly larger than 12MB, named ibdata1:

mysql> SHOW VARIABLES LIKE 'innodb_data_file_path';
+-----------------------+------------------------+
| Variable_name         | Value                  |
+-----------------------+------------------------+
| innodb_data_file_path | ibdata1:12M:autoextend |
+-----------------------+------------------------+  

The full data file specification syntax includes the file name, file size, autoextend attribute, and max attribute:

file_name:file_size[:autoextend[:max:max_file_size]]

File sizes are specified in kilobytes, megabytes, or gigabytes by appending K, M or G to the size value. If specifying the data file size in kilobytes, do so in multiples of 1024. Otherwise, kilobyte values are rounded to nearest megabyte (MB) boundary. The sum of file sizes must be, at a minimum, slightly larger than 12MB.

You can specify more than one data file using a semicolon-separated list. For example:

[mysqld]
innodb_data_file_path=ibdata1:50M;ibdata2:50M:autoextend

The autoextend and max attributes can be used only for the data file that is specified last.

When the autoextend attribute is specified, the data file automatically increases in size by 64MB increments as space is required. The innodb_autoextend_increment variable controls the increment size.

To specify a maximum size for an auto-extending data file, use the max attribute following the autoextend attribute. Use the max attribute only in cases where constraining disk usage is of critical importance. The following configuration permits ibdata1 to grow to a limit of 500MB:

[mysqld]
innodb_data_file_path=ibdata1:12M:autoextend:max:500M

A minimum file size is enforced for the first system tablespace data file to ensure that there is enough space for doublewrite buffer pages. The following table shows minimum file sizes for each InnoDB page size. The default InnoDB page size is 16384 (16KB).

Page Size (innodb_page_size) Minimum File Size
16384 (16KB) or less 3MB
32768 (32KB) 6MB
65536 (64KB) 12MB

If your disk becomes full, you can add a data file on another disk. For instructions, see Resizing the System Tablespace.

The size limit for individual files is determined by your operating system. You can set the file size to more than 4GB on operating systems that support large files. You can also use raw disk partitions as data files. See Using Raw Disk Partitions for the System Tablespace.

InnoDB is not aware of the file system maximum file size, so be cautious on file systems where the maximum file size is a small value such as 2GB.

System tablespace files are created in the data directory by default (datadir). To specify an alternate location, use the innodb_data_home_dir option. For example, to create a system tablespace data file in a directory named myibdata, use this configuration:

[mysqld]
innodb_data_home_dir = /myibdata/
innodb_data_file_path=ibdata1:50M:autoextend

A trailing slash is required when specifying a value for innodb_data_home_dir. InnoDB does not create directories, so ensure that the specified directory exists before you start the server. Also, ensure sure that the MySQL server has the proper access rights to create files in the directory.

InnoDB forms the directory path for each data file by textually concatenating the value of innodb_data_home_dir to the data file name. If innodb_data_home_dir is not defined, the default value is ./, which is the data directory. (The MySQL server changes its current working directory to the data directory when it begins executing.)

If you specify innodb_data_home_dir as an empty string, you can specify absolute paths for data files listed in the innodb_data_file_path value. The following configuration is equivalent to the preceding one:

[mysqld]
innodb_data_home_dir =
innodb_data_file_path=/myibdata/ibdata1:50M:autoextend

Redo Log File Configuration

By default, InnoDB creates two 5MB redo log files in the data directory named ib_logfile0 and ib_logfile1.

The following options can be used to modify the default configuration:

  • innodb_log_group_home_dir defines directory path to the InnoDB log files (the redo logs). If this option is not configured, InnoDB log files are created in the MySQL data directory (datadir).

    You might use this option to place InnoDB log files in a different physical storage location than InnoDB data files to avoid potential I/O resource conflicts. For example:

    [mysqld]
    innodb_log_group_home_dir = /dr3/iblogs
    Note

    InnoDB does not create directories, so make sure that the log directory exists before you start the server. Use the Unix or DOS mkdir command to create any necessary directories.

    Make sure that the MySQL server has the proper access rights to create files in the log directory. More generally, the server must have access rights in any directory where it needs to create log files.

  • innodb_log_files_in_group defines the number of log files in the log group. The default and recommended value is 2.

  • innodb_log_file_size defines the size in bytes of each log file in the log group. The combined size of log files (innodb_log_file_size * innodb_log_files_in_group) cannot exceed a maximum value that is slightly less than 512GB. A pair of 255 GB log files, for example, approaches the limit but does not exceed it. The default log file size is 48MB. Generally, the combined size of the log files should be large enough that the server can smooth out peaks and troughs in workload activity, which often means that there is enough redo log space to handle more than an hour of write activity. The larger the value, the less checkpoint flush activity is needed in the buffer pool, saving disk I/O. For additional information, see Section 8.5.4, “Optimizing InnoDB Redo Logging”.

Undo Tablespace Configuration

By default, InnoDB undo logs are part of the system tablespace. However, you can choose to store InnoDB undo logs in one or more separate undo tablespaces, typically on a different storage device.

The innodb_undo_directory configuration option defines the path where InnoDB creates separate tablespaces for the undo logs. This option is typically used in conjunction with the innodb_rollback_segments and innodb_undo_tablespaces options, which determine the disk layout of the undo logs outside the system tablespace.

Note

innodb_undo_tablespaces is deprecated and will be removed in a future release.

For more information, see Section 14.6.3.4, “Undo Tablespaces”.

Temporary Tablespace Configuration

By default, InnoDB creates a single auto-extending temporary tablespace data file named ibtmp1 that is slightly larger than 12MB in the innodb_data_home_dir directory. The default temporary tablespace data file configuration can be modified at startup using the innodb_temp_data_file_path configuration option.

The innodb_temp_data_file_path option specifies the path, file name, and file size for InnoDB temporary tablespace data files. The full directory path for a file is formed by concatenating innodb_data_home_dir to the path specified by innodb_temp_data_file_path. File size is specified in KB, MB, or GB (1024MB) by appending K, M, or G to the size value. The sum of the sizes of the files must be slightly larger than 12MB.

The innodb_data_home_dir default value is the MySQL data directory (datadir).

An autoextending temporary tablespace data file can become large in environments that use large temporary tables or that use temporary tables extensively. A large data file can also result from long running queries that use temporary tables. To prevent the temporary data file from becoming too large, configure the innodb_temp_data_file_path option to specify a maximum data file size. For more information see Managing Temporary Tablespace Data File Size.

Page Size Configuration

The innodb_page_size option specifies the page size for all InnoDB tablespaces in a MySQL instance. This value is set when the instance is created and remains constant afterward. Valid values are 64KB, 32KB, 16KB (the default), 8KB, and 4KB. Alternatively, you can specify page size in bytes (65536, 32768, 16384, 8192, 4096).

The default page size of 16KB is appropriate for a wide range of workloads, particularly for queries involving table scans and DML operations involving bulk updates. Smaller page sizes might be more efficient for OLTP workloads involving many small writes, where contention can be an issue when a single page contains many rows. Smaller pages might also be efficient with SSD storage devices, which typically use small block sizes. Keeping the InnoDB page size close to the storage device block size minimizes the amount of unchanged data that is rewritten to disk.

Memory Configuration

MySQL allocates memory to various caches and buffers to improve performance of database operations. When allocating memory for InnoDB, always consider memory required by the operating system, memory allocated to other applications, and memory allocated for other MySQL buffers and caches. For example, if you use MyISAM tables, consider the amount of memory allocated for the key buffer (key_buffer_size). For an overview of MySQL buffers and caches, see Section 8.12.4.1, “How MySQL Uses Memory”.

Buffers specific to InnoDB are configured using the following parameters:

Warning

On 32-bit GNU/Linux x86, be careful not to set memory usage too high. glibc may permit the process heap to grow over thread stacks, which crashes your server. It is a risk if the memory allocated to the mysqld process for global and per-thread buffers and caches is close to or exceeds 2GB.

A formula similar to the following that calculates global and per-thread memory allocation for MySQL can be used to estimate MySQL memory usage. You may need to modify the formula to account for buffers and caches in your MySQL version and configuration. For an overview of MySQL buffers and caches, see Section 8.12.4.1, “How MySQL Uses Memory”.

innodb_buffer_pool_size
+ key_buffer_size
+ max_connections*(sort_buffer_size+read_buffer_size+binlog_cache_size)
+ max_connections*2MB

Each thread uses a stack (often 2MB, but only 256KB in MySQL binaries provided by Oracle Corporation.) and in the worst case also uses sort_buffer_size + read_buffer_size additional memory.

On Linux, if the kernel is enabled for large page support, InnoDB can use large pages to allocate memory for its buffer pool. See Section 8.12.4.2, “Enabling Large Page Support”.

14.8.2 Configuring InnoDB for Read-Only Operation

You can query InnoDB tables where the MySQL data directory is on read-only media by enabling the --innodb-read-only configuration option at server startup.

How to Enable

To prepare an instance for read-only operation, make sure all the necessary information is flushed to the data files before storing it on the read-only medium. Run the server with change buffering disabled (innodb_change_buffering=0) and do a slow shutdown.

To enable read-only mode for an entire MySQL instance, specify the following configuration options at server startup:

  • --innodb-read-only=1

  • If the instance is on read-only media such as a DVD or CD, or the /var directory is not writeable by all: --pid-file=path_on_writeable_media and --event-scheduler=disabled

  • --innodb-temp-data-file-path. This option specifies the path, file name, and file size for InnoDB temporary tablespace data files. The default setting is ibtmp1:12M:autoextend, which creates the ibtmp1 temporary tablespace data file in the data directory. To prepare an instance for read-only operation, set innodb_temp_data_file_path to a location outside of the data directory. The path must be relative to the data directory. For example:

    --innodb-temp-data-file-path=../../../tmp/ibtmp1:12M:autoextend         

Usage Scenarios

This mode of operation is appropriate in situations such as:

  • Distributing a MySQL application, or a set of MySQL data, on a read-only storage medium such as a DVD or CD.

  • Multiple MySQL instances querying the same data directory simultaneously, typically in a data warehousing configuration. You might use this technique to avoid bottlenecks that can occur with a heavily loaded MySQL instance, or you might use different configuration options for the various instances to tune each one for particular kinds of queries.

  • Querying data that has been put into a read-only state for security or data integrity reasons, such as archived backup data.

Note

This feature is mainly intended for flexibility in distribution and deployment, rather than raw performance based on the read-only aspect. See Section 8.5.3, “Optimizing InnoDB Read-Only Transactions” for ways to tune the performance of read-only queries, which do not require making the entire server read-only.

How It Works

When the server is run in read-only mode through the --innodb-read-only option, certain InnoDB features and components are reduced or turned off entirely:

  • No change buffering is done, in particular no merges from the change buffer. To make sure the change buffer is empty when you prepare the instance for read-only operation, disable change buffering (innodb_change_buffering=0) and do a slow shutdown first.

  • There is no crash recovery phase at startup. The instance must have performed a slow shutdown before being put into the read-only state.

  • Because the redo log is not used in read-only operation, you can set innodb_log_file_size to the smallest size possible (1 MB) before making the instance read-only.

  • Most background threads are turned off. I/O read threads remain, as well as I/O write threads and a page cleaner thread for writes to temporary files, which are permitted in read-only mode.

  • Information about deadlocks, monitor output, and so on is not written to temporary files. As a consequence, SHOW ENGINE INNODB STATUS does not produce any output.

  • If the MySQL server is started with --innodb-read-only but the data directory is still on writeable media, the root user can still perform DCL operations such as GRANT and REVOKE.

  • Changes to configuration option settings that would normally change the behavior of write operations, have no effect when the server is in read-only mode.

  • The MVCC processing to enforce isolation levels is turned off. All queries read the latest version of a record, because update and deletes are not possible.

  • The undo log is not used. Disable any settings for the innodb_undo_tablespaces and innodb_undo_directory configuration options.

14.8.3 InnoDB Buffer Pool Configuration

This section provides configuration and tuning information for the InnoDB buffer pool.

14.8.3.1 Configuring InnoDB Buffer Pool Size

You can configure InnoDB buffer pool size offline (at startup) or online, while the server is running. Behavior described in this section applies to both methods. For additional information about configuring buffer pool size online, see Configuring InnoDB Buffer Pool Size Online.

When increasing or decreasing innodb_buffer_pool_size, the operation is performed in chunks. Chunk size is defined by the innodb_buffer_pool_chunk_size configuration option, which has a default of 128M. For more information, see Configuring InnoDB Buffer Pool Chunk Size.

Buffer pool size must always be equal to or a multiple of innodb_buffer_pool_chunk_size * innodb_buffer_pool_instances. If you configure innodb_buffer_pool_size to a value that is not equal to or a multiple of innodb_buffer_pool_chunk_size * innodb_buffer_pool_instances, buffer pool size is automatically adjusted to a value that is equal to or a multiple of innodb_buffer_pool_chunk_size * innodb_buffer_pool_instances.

In the following example, innodb_buffer_pool_size is set to 8G, and innodb_buffer_pool_instances is set to 16. innodb_buffer_pool_chunk_size is 128M, which is the default value.

8G is a valid innodb_buffer_pool_size value because 8G is a multiple of innodb_buffer_pool_instances=16 * innodb_buffer_pool_chunk_size=128M, which is 2G.

shell> mysqld --innodb-buffer-pool-size=8G --innodb-buffer-pool-instances=16
mysql> SELECT @@innodb_buffer_pool_size/1024/1024/1024;
+------------------------------------------+
| @@innodb_buffer_pool_size/1024/1024/1024 |
+------------------------------------------+
|                           8.000000000000 |
+------------------------------------------+

In this example, innodb_buffer_pool_size is set to 9G, and innodb_buffer_pool_instances is set to 16. innodb_buffer_pool_chunk_size is 128M, which is the default value. In this case, 9G is not a multiple of innodb_buffer_pool_instances=16 * innodb_buffer_pool_chunk_size=128M, so innodb_buffer_pool_size is adjusted to 10G, which is a multiple of innodb_buffer_pool_chunk_size * innodb_buffer_pool_instances.

shell> mysqld --innodb-buffer-pool-size=9G --innodb-buffer-pool-instances=16
mysql> SELECT @@innodb_buffer_pool_size/1024/1024/1024;
+------------------------------------------+
| @@innodb_buffer_pool_size/1024/1024/1024 |
+------------------------------------------+
|                          10.000000000000 |
+------------------------------------------+
Configuring InnoDB Buffer Pool Chunk Size

innodb_buffer_pool_chunk_size can be increased or decreased in 1MB (1048576 byte) units but can only be modified at startup, in a command line string or in a MySQL configuration file.

Command line:

shell> mysqld --innodb-buffer-pool-chunk-size=134217728

Configuration file:

[mysqld]
innodb_buffer_pool_chunk_size=134217728

The following conditions apply when altering innodb_buffer_pool_chunk_size:

  • If the new innodb_buffer_pool_chunk_size value * innodb_buffer_pool_instances is larger than the current buffer pool size when the buffer pool is initialized, innodb_buffer_pool_chunk_size is truncated to innodb_buffer_pool_size / innodb_buffer_pool_instances.

    For example, if the buffer pool is initialized with a size of 2GB (2147483648 bytes), 4 buffer pool instances, and a chunk size of 1GB (1073741824 bytes), chunk size is truncated to a value equal to innodb_buffer_pool_size / innodb_buffer_pool_instances, as shown below:

    shell> mysqld --innodb-buffer-pool-size=2147483648 --innodb-buffer-pool-instances=4
    --innodb-buffer-pool-chunk-size=1073741824;
    
    mysql> SELECT @@innodb_buffer_pool_size;
    +---------------------------+
    | @@innodb_buffer_pool_size |
    +---------------------------+
    |                2147483648 |
    +---------------------------+
    
    mysql> SELECT @@innodb_buffer_pool_instances;
    +--------------------------------+
    | @@innodb_buffer_pool_instances |
    +--------------------------------+
    |                              4 |
    +--------------------------------+
    
    # Chunk size was set to 1GB (1073741824 bytes) on startup but was
    # truncated to innodb_buffer_pool_size / innodb_buffer_pool_instances
    
    mysql> SELECT @@innodb_buffer_pool_chunk_size;
    +---------------------------------+
    | @@innodb_buffer_pool_chunk_size |
    +---------------------------------+
    |                       536870912 |
    +---------------------------------+
    
  • Buffer pool size must always be equal to or a multiple of innodb_buffer_pool_chunk_size * innodb_buffer_pool_instances. If you alter innodb_buffer_pool_chunk_size, innodb_buffer_pool_size is automatically adjusted to a value that is equal to or a multiple of innodb_buffer_pool_chunk_size * innodb_buffer_pool_instances. The adjustment occurs when the buffer pool is initialized. This behavior is demonstrated in the following example:

    # The buffer pool has a default size of 128MB (134217728 bytes)
    
    mysql> SELECT @@innodb_buffer_pool_size;
    +---------------------------+
    | @@innodb_buffer_pool_size |
    +---------------------------+
    |                 134217728 |
    +---------------------------+
    
    # The chunk size is also 128MB (134217728 bytes)
    
    mysql> SELECT @@innodb_buffer_pool_chunk_size;
    +---------------------------------+
    | @@innodb_buffer_pool_chunk_size |
    +---------------------------------+
    |                       134217728 |
    +---------------------------------+
    
    # There is a single buffer pool instance
    
    mysql> SELECT @@innodb_buffer_pool_instances;
    +--------------------------------+
    | @@innodb_buffer_pool_instances |
    +--------------------------------+
    |                              1 |
    +--------------------------------+
    
    # Chunk size is decreased by 1MB (1048576 bytes) at startup
    # (134217728 - 1048576 = 133169152):
    
    shell> mysqld --innodb-buffer-pool-chunk-size=133169152
    
    mysql> SELECT @@innodb_buffer_pool_chunk_size;
    +---------------------------------+
    | @@innodb_buffer_pool_chunk_size |
    +---------------------------------+
    |                       133169152 |
    +---------------------------------+
    
    # Buffer pool size increases from 134217728 to 266338304
    # Buffer pool size is automatically adjusted to a value that is equal to
    # or a multiple of innodb_buffer_pool_chunk_size * innodb_buffer_pool_instances
    
    mysql> SELECT @@innodb_buffer_pool_size;
    +---------------------------+
    | @@innodb_buffer_pool_size |
    +---------------------------+
    |                 266338304 |
    +---------------------------+

    This example demonstrates the same behavior but with multiple buffer pool instances:

    # The buffer pool has a default size of 2GB (2147483648 bytes)
    
    mysql> SELECT @@innodb_buffer_pool_size;
    +---------------------------+
    | @@innodb_buffer_pool_size |
    +---------------------------+
    |                2147483648 |
    +---------------------------+
    
    # The chunk size is .5 GB (536870912 bytes)
    
    mysql> SELECT @@innodb_buffer_pool_chunk_size;
    +---------------------------------+
    | @@innodb_buffer_pool_chunk_size |
    +---------------------------------+
    |                       536870912 |
    +---------------------------------+
    
    # There are 4 buffer pool instances
    
    mysql> SELECT @@innodb_buffer_pool_instances;
    +--------------------------------+
    | @@innodb_buffer_pool_instances |
    +--------------------------------+
    |                              4 |
    +--------------------------------+
    
    # Chunk size is decreased by 1MB (1048576 bytes) at startup
    # (536870912 - 1048576 = 535822336):
    
    shell> mysqld --innodb-buffer-pool-chunk-size=535822336
    
    mysql> SELECT @@innodb_buffer_pool_chunk_size;
    +---------------------------------+
    | @@innodb_buffer_pool_chunk_size |
    +---------------------------------+
    |                       535822336 |
    +---------------------------------+
    
    # Buffer pool size increases from 2147483648 to 4286578688
    # Buffer pool size is automatically adjusted to a value that is equal to
    # or a multiple of innodb_buffer_pool_chunk_size * innodb_buffer_pool_instances
    
    mysql> SELECT @@innodb_buffer_pool_size;
    +---------------------------+
    | @@innodb_buffer_pool_size |
    +---------------------------+
    |                4286578688 |
    +---------------------------+
    

    Care should be taken when changing innodb_buffer_pool_chunk_size, as changing this value can increase the size of the buffer pool, as shown in the examples above. Before you change innodb_buffer_pool_chunk_size, calculate the effect on innodb_buffer_pool_size to ensure that the resulting buffer pool size is acceptable.

Note

To avoid potential performance issues, the number of chunks (innodb_buffer_pool_size / innodb_buffer_pool_chunk_size) should not exceed 1000.

Configuring InnoDB Buffer Pool Size Online

The innodb_buffer_pool_size configuration option can be set dynamically using a SET statement, allowing you to resize the buffer pool without restarting the server. For example:

mysql> SET GLOBAL innodb_buffer_pool_size=402653184;

Active transactions and operations performed through InnoDB APIs should be completed before resizing the buffer pool. When initiating a resizing operation, the operation does not start until all active transactions are completed. Once the resizing operation is in progress, new transactions and operations that require access to the buffer pool must wait until the resizing operation finishes. The exception to the rule is that concurrent access to the buffer pool is permitted while the buffer pool is defragmented and pages are withdrawn when buffer pool size is decreased. A drawback of allowing concurrent access is that it could result in a temporary shortage of available pages while pages are being withdrawn.

Note

Nested transactions could fail if initiated after the buffer pool resizing operation begins.

Monitoring Online Buffer Pool Resizing Progress

The Innodb_buffer_pool_resize_status reports buffer pool resizing progress. For example:

mysql> SHOW STATUS WHERE Variable_name='InnoDB_buffer_pool_resize_status';
+----------------------------------+----------------------------------+
| Variable_name                    | Value                            |
+----------------------------------+----------------------------------+
| Innodb_buffer_pool_resize_status | Resizing also other hash tables. |
+----------------------------------+----------------------------------+

Buffer pool resizing progress is also logged in the server error log. This example shows notes that are logged when increasing the size of the buffer pool:

[Note] InnoDB: Resizing buffer pool from 134217728 to 4294967296. (unit=134217728)
[Note] InnoDB: disabled adaptive hash index.
[Note] InnoDB: buffer pool 0 : 31 chunks (253952 blocks) was added.
[Note] InnoDB: buffer pool 0 : hash tables were resized.
[Note] InnoDB: Resized hash tables at lock_sys, adaptive hash index, dictionary.
[Note] InnoDB: completed to resize buffer pool from 134217728 to 4294967296.
[Note] InnoDB: re-enabled adaptive hash index.

This example shows notes that are logged when decreasing the size of the buffer pool:

[Note] InnoDB: Resizing buffer pool from 4294967296 to 134217728. (unit=134217728)
[Note] InnoDB: disabled adaptive hash index.
[Note] InnoDB: buffer pool 0 : start to withdraw the last 253952 blocks.
[Note] InnoDB: buffer pool 0 : withdrew 253952 blocks from free list. tried to relocate 0 pages.
(253952/253952)
[Note] InnoDB: buffer pool 0 : withdrawn target 253952 blocks.
[Note] InnoDB: buffer pool 0 : 31 chunks (253952 blocks) was freed.
[Note] InnoDB: buffer pool 0 : hash tables were resized.
[Note] InnoDB: Resized hash tables at lock_sys, adaptive hash index, dictionary.
[Note] InnoDB: completed to resize buffer pool from 4294967296 to 134217728.
[Note] InnoDB: re-enabled adaptive hash index.
Online Buffer Pool Resizing Internals

The resizing operation is performed by a background thread. When increasing the size of the buffer pool, the resizing operation:

  • Adds pages in chunks (chunk size is defined by innodb_buffer_pool_chunk_size)

  • Coverts hash tables, lists, and pointers to use new addresses in memory

  • Adds new pages to the free list

While these operations are in progress, other threads are blocked from accessing the buffer pool.

When decreasing the size of the buffer pool, the resizing operation:

  • Defragments the buffer pool and withdraws (frees) pages

  • Removes pages in chunks (chunk size is defined by innodb_buffer_pool_chunk_size)

  • Converts hash tables, lists, and pointers to use new addresses in memory

Of these operations, only defragmenting the buffer pool and withdrawing pages allow other threads to access to the buffer pool concurrently.

14.8.3.2 Configuring Multiple Buffer Pool Instances

For systems with buffer pools in the multi-gigabyte range, dividing the buffer pool into separate instances can improve concurrency, by reducing contention as different threads read and write to cached pages. This feature is typically intended for systems with a buffer pool size in the multi-gigabyte range. Multiple buffer pool instances are configured using the innodb_buffer_pool_instances configuration option, and you might also adjust the innodb_buffer_pool_size value.

When the InnoDB buffer pool is large, many data requests can be satisfied by retrieving from memory. You might encounter bottlenecks from multiple threads trying to access the buffer pool at once. You can enable multiple buffer pools to minimize this contention. Each page that is stored in or read from the buffer pool is assigned to one of the buffer pools randomly, using a hashing function. Each buffer pool manages its own free lists, flush lists, LRUs, and all other data structures connected to a buffer pool, and is protected by its own buffer pool mutex.

To enable multiple buffer pool instances, set the innodb_buffer_pool_instances configuration option to a value greater than 1 (the default) up to 64 (the maximum). This option takes effect only when you set innodb_buffer_pool_size to a size of 1GB or more. The total size you specify is divided among all the buffer pools. For best efficiency, specify a combination of innodb_buffer_pool_instances and innodb_buffer_pool_size so that each buffer pool instance is at least 1GB.

For information about modifying InnoDB buffer pool size, see Section 14.8.3.1, “Configuring InnoDB Buffer Pool Size”.

14.8.3.3 Making the Buffer Pool Scan Resistant

Rather than using a strict LRU algorithm, InnoDB uses a technique to minimize the amount of data that is brought into the buffer pool and never accessed again. The goal is to make sure that frequently accessed (hot) pages remain in the buffer pool, even as read-ahead and full table scans bring in new blocks that might or might not be accessed afterward.

Newly read blocks are inserted into the middle of the LRU list. All newly read pages are inserted at a location that by default is 3/8 from the tail of the LRU list. The pages are moved to the front of the list (the most-recently used end) when they are accessed in the buffer pool for the first time. Thus, pages that are never accessed never make it to the front portion of the LRU list, and age out sooner than with a strict LRU approach. This arrangement divides the LRU list into two segments, where the pages downstream of the insertion point are considered old and are desirable victims for LRU eviction.

For an explanation of the inner workings of the InnoDB buffer pool and specifics about the LRU algorithm, see Section 14.5.1, “Buffer Pool”.

You can control the insertion point in the LRU list and choose whether InnoDB applies the same optimization to blocks brought into the buffer pool by table or index scans. The configuration parameter innodb_old_blocks_pct controls the percentage of old blocks in the LRU list. The default value of innodb_old_blocks_pct is 37, corresponding to the original fixed ratio of 3/8. The value range is 5 (new pages in the buffer pool age out very quickly) to 95 (only 5% of the buffer pool is reserved for hot pages, making the algorithm close to the familiar LRU strategy).

The optimization that keeps the buffer pool from being churned by read-ahead can avoid similar problems due to table or index scans. In these scans, a data page is typically accessed a few times in quick succession and is never touched again. The configuration parameter innodb_old_blocks_time specifies the time window (in milliseconds) after the first access to a page during which it can be accessed without being moved to the front (most-recently used end) of the LRU list. The default value of innodb_old_blocks_time is 1000. Increasing this value makes more and more blocks likely to age out faster from the buffer pool.

Both innodb_old_blocks_pct and innodb_old_blocks_time can be specified in the MySQL option file (my.cnf or my.ini) or changed at runtime with the SET GLOBAL statement. Changing the value at runtime requires privileges sufficient to set global system variables. See Section 5.1.8.1, “System Variable Privileges”.

To help you gauge the effect of setting these parameters, the SHOW ENGINE INNODB STATUS command reports buffer pool statistics. For details, see Monitoring the Buffer Pool Using the InnoDB Standard Monitor.

Because the effects of these parameters can vary widely based on your hardware configuration, your data, and the details of your workload, always benchmark to verify the effectiveness before changing these settings in any performance-critical or production environment.

In mixed workloads where most of the activity is OLTP type with periodic batch reporting queries which result in large scans, setting the value of innodb_old_blocks_time during the batch runs can help keep the working set of the normal workload in the buffer pool.

When scanning large tables that cannot fit entirely in the buffer pool, setting innodb_old_blocks_pct to a small value keeps the data that is only read once from consuming a significant portion of the buffer pool. For example, setting innodb_old_blocks_pct=5 restricts this data that is only read once to 5% of the buffer pool.

When scanning small tables that do fit into memory, there is less overhead for moving pages around within the buffer pool, so you can leave innodb_old_blocks_pct at its default value, or even higher, such as innodb_old_blocks_pct=50.

The effect of the innodb_old_blocks_time parameter is harder to predict than the innodb_old_blocks_pct parameter, is relatively small, and varies more with the workload. To arrive at an optimal value, conduct your own benchmarks if the performance improvement from adjusting innodb_old_blocks_pct is not sufficient.

14.8.3.4 Configuring InnoDB Buffer Pool Prefetching (Read-Ahead)

A read-ahead request is an I/O request to prefetch multiple pages in the buffer pool asynchronously, in anticipation that these pages will be needed soon. The requests bring in all the pages in one extent. InnoDB uses two read-ahead algorithms to improve I/O performance:

Linear read-ahead is a technique that predicts what pages might be needed soon based on pages in the buffer pool being accessed sequentially. You control when InnoDB performs a read-ahead operation by adjusting the number of sequential page accesses required to trigger an asynchronous read request, using the configuration parameter innodb_read_ahead_threshold. Before this parameter was added, InnoDB would only calculate whether to issue an asynchronous prefetch request for the entire next extent when it read the last page of the current extent.

The configuration parameter innodb_read_ahead_threshold controls how sensitive InnoDB is in detecting patterns of sequential page access. If the number of pages read sequentially from an extent is greater than or equal to innodb_read_ahead_threshold, InnoDB initiates an asynchronous read-ahead operation of the entire following extent. innodb_read_ahead_threshold can be set to any value from 0-64. The default value is 56. The higher the value, the more strict the access pattern check. For example, if you set the value to 48, InnoDB triggers a linear read-ahead request only when 48 pages in the current extent have been accessed sequentially. If the value is 8, InnoDB triggers an asynchronous read-ahead even if as few as 8 pages in the extent are accessed sequentially. You can set the value of this parameter in the MySQL configuration file, or change it dynamically with the SET GLOBAL statement, which requires privileges sufficient to set global system variables. See Section 5.1.8.1, “System Variable Privileges”.

Random read-ahead is a technique that predicts when pages might be needed soon based on pages already in the buffer pool, regardless of the order in which those pages were read. If 13 consecutive pages from the same extent are found in the buffer pool, InnoDB asynchronously issues a request to prefetch the remaining pages of the extent. To enable this feature, set the configuration variable innodb_random_read_ahead to ON.

The SHOW ENGINE INNODB STATUS command displays statistics to help you evaluate the effectiveness of the read-ahead algorithm. Statistics include counter information for the following global status variables:

This information can be useful when fine-tuning the innodb_random_read_ahead setting.

For more information about I/O performance, see Section 8.5.8, “Optimizing InnoDB Disk I/O” and Section 8.12.2, “Optimizing Disk I/O”.

14.8.3.5 Configuring Buffer Pool Flushing

InnoDB performs certain tasks in the background, including flushing of dirty pages from the buffer pool. Dirty pages are those that have been modified but are not yet written to the data files on disk.

In MySQL 5.7, buffer pool flushing is performed by page cleaner threads. The number of page cleaner threads is controlled by the innodb_page_cleaners variable, which has a default value of 4.

Buffer pool flushing is initiated when the percentage of dirty pages reaches the low water mark value defined by the innodb_max_dirty_pages_pct_lwm variable. The default low water mark is 0, which disables this early flushing behaviour.

The purpose of the innodb_max_dirty_pages_pct_lwm threshold is to control the percentage dirty pages in the buffer pool, and to prevent the amount of dirty pages from reaching the threshold defined by the innodb_max_dirty_pages_pct variable, which has a default value of 75. InnoDB aggressively flushes buffer pool pages if the percentage of dirty pages in the buffer pool reaches the innodb_max_dirty_pages_pct threshold.

Additional variables permit fine-tuning of buffer pool flushing behavior:

  • The innodb_flush_neighbors variable defines whether flushing a page from the buffer pool also flushes other dirty pages in the same extent.

    • A setting of 0 disables innodb_flush_neighbors. Dirty pages in the same extent are not flushed.

    • The default setting of 1 flushes contiguous dirty pages in the same extent.

    • A setting of 2 flushes dirty pages in the same extent.

    When table data is stored on a traditional HDD storage device, flushing neighbor pages in one operation reduces I/O overhead (primarily for disk seek operations) compared to flushing individual pages at different times. For table data stored on SSD, seek time is not a significant factor and you can disable this setting to spread out write operations.

  • The innodb_lru_scan_depth variable specifies, per buffer pool instance, how far down the buffer pool LRU list the page cleaner thread scans looking for dirty pages to flush. This is a background operation performed by a page cleaner thread once per second.

    A setting smaller than the default is generally suitable for most workloads. A value that is significantly higher than necessary may impact performance. Only consider increasing the value if you have spare I/O capacity under a typical workload. Conversely, if a write-intensive workload saturates your I/O capacity, decrease the value, especially in the case of a large buffer pool.

    When tuning innodb_lru_scan_depth, start with a low value and configure the setting upward with the goal of rarely seeing zero free pages. Also, consider adjusting innodb_lru_scan_depth when changing the number of buffer pool instances, since innodb_lru_scan_depth * innodb_buffer_pool_instances defines the amount of work performed by the page cleaner thread each second.

The innodb_flush_neighbors and innodb_lru_scan_depth variables are primarily intended for write-intensive workloads. With heavy DML activity, flushing can fall behind if it is not aggressive enough, or disk writes can saturate I/O capacity if flushing is too aggressive. The ideal settings depend on your workload, data access patterns, and storage configuration (for example, whether data is stored on HDD or SSD devices).

Adaptive Flushing

InnoDB uses an adaptive flushing algorithm to dynamically adjust the rate of flushing based on the speed of redo log generation and the current rate of flushing. The intent is to smooth overall performance by ensuring that flushing activity keeps pace with the current workload. Automatically adjusting the flushing rate helps avoid sudden dips in throughput that can occur when bursts of I/O activity due to buffer pool flushing affects the I/O capacity available for ordinary read and write activity.

Sharp checkpoints, which are typically associated with write-intensive workloads that generate a lot of redo entries, can cause a sudden change in throughput, for example. A sharp checkpoint occurs when InnoDB wants to reuse a portion of a log file. Before doing so, all dirty pages with redo entries in that portion of the log file must be flushed. If log files become full, a sharp checkpoint occurs, causing a temporary reduction in throughput. This scenario can occur even if innodb_max_dirty_pages_pct threshold is not reached.

The adaptive flushing algorithm helps avoid such scenarios by tracking the number of dirty pages in the buffer pool and the rate at which redo log records are being generated. Based on this information, it decides how many dirty pages to flush from the buffer pool each second, which permits it to manage sudden changes in workload.

The innodb_adaptive_flushing_lwm variable defines a low water mark for redo log capacity. When that threshold is crossed, adaptive flushing is enabled, even if the innodb_adaptive_flushing variable is disabled.

Internal benchmarking has shown that the algorithm not only maintains throughput over time, but can also improve overall throughput significantly. However, adaptive flushing can affect the I/O pattern of a workload significantly and may not be appropriate in all cases. It gives the most benefit when the redo log is in danger of filling up. If adaptive flushing is not appropriate to the characteristics of your workload, you can disable it. Adaptive flushing controlled by the innodb_adaptive_flushing variable, which is enabled by default.

innodb_flushing_avg_loops defines the number of iterations that InnoDB keeps the previously calculated snapshot of the flushing state, controlling how quickly adaptive flushing responds to foreground workload changes. A high innodb_flushing_avg_loops value means that InnoDB keeps the previously calculated snapshot longer, so adaptive flushing responds more slowly. When setting a high value it is important to ensure that redo log utilization does not reach 75% (the hardcoded limit at which asynchronous flushing starts), and that the innodb_max_dirty_pages_pct threshold keeps the number of dirty pages to a level that is appropriate for the workload.

Systems with consistent workloads, a large log file size (innodb_log_file_size), and small spikes that do not reach 75% log space utilization should use a high innodb_flushing_avg_loops value to keep flushing as smooth as possible. For systems with extreme load spikes or log files that do not provide a lot of space, a smaller value allows flushing to closely track workload changes, and helps to avoid reaching 75% log space utilization.

Be aware that if flushing falls behind, the rate of buffer pool flushing can exceed the I/O capacity available to InnoDB, as defined by innodb_io_capacity setting. The innodb_io_capacity_max value defines an upper limit on I/O capacity in such situations, so that a spike in I/O activity does not consume the entire I/O capacity of the server.

The innodb_io_capacity setting is applicable to all buffer pool instances. When dirty pages are flushed, I/O capacity is divided equally among buffer pool instances.

14.8.3.6 Saving and Restoring the Buffer Pool State

To reduce the warmup period after restarting the server, InnoDB saves a percentage of the most recently used pages for each buffer pool at server shutdown and restores these pages at server startup. The percentage of recently used pages that is stored is defined by the innodb_buffer_pool_dump_pct configuration option.

After restarting a busy server, there is typically a warmup period with steadily increasing throughput, as disk pages that were in the buffer pool are brought back into memory (as the same data is queried, updated, and so on). The ability to restore the buffer pool at startup shortens the warmup period by reloading disk pages that were in the buffer pool before the restart rather than waiting for DML operations to access corresponding rows. Also, I/O requests can be performed in large batches, making the overall I/O faster. Page loading happens in the background, and does not delay database startup.

In addition to saving the buffer pool state at shutdown and restoring it at startup, you can save and restore the buffer pool state at any time, while the server is running. For example, you can save the state of the buffer pool after reaching a stable throughput under a steady workload. You could also restore the previous buffer pool state after running reports or maintenance jobs that bring data pages into the buffer pool that are only requited for those operations, or after running some other non-typical workload.

Even though a buffer pool can be many gigabytes in size, the buffer pool data that InnoDB saves to disk is tiny by comparison. Only tablespace IDs and page IDs necessary to locate the appropriate pages are saved to disk. This information is derived from the INNODB_BUFFER_PAGE_LRU INFORMATION_SCHEMA table. By default, tablespace ID and page ID data is saved in a file named ib_buffer_pool, which is saved to the InnoDB data directory. The file name and location can be modified using the innodb_buffer_pool_filename configuration parameter.

Because data is cached in and aged out of the buffer pool as it is with regular database operations, there is no problem if the disk pages are recently updated, or if a DML operation involves data that has not yet been loaded. The loading mechanism skips requested pages that no longer exist.

The underlying mechanism involves a background thread that is dispatched to perform the dump and load operations.

Disk pages from compressed tables are loaded into the buffer pool in their compressed form. Pages are uncompressed as usual when page contents are accessed during DML operations. Because uncompressing pages is a CPU-intensive process, it is more efficient for concurrency to perform the operation in a connection thread rather than in the single thread that performs the buffer pool restore operation.

Operations related to saving and restoring the buffer pool state are described in the following topics:

Configuring the Dump Percentage for Buffer Pool Pages

Before dumping pages from the buffer pool, you can configure the percentage of most-recently-used buffer pool pages that you want to dump by setting the innodb_buffer_pool_dump_pct option. If you plan to dump buffer pool pages while the server is running, you can configure the option dynamically:

SET GLOBAL innodb_buffer_pool_dump_pct=40;

If you plan to dump buffer pool pages at server shutdown, set innodb_buffer_pool_dump_pct in your configuration file.

[mysqld]
innodb_buffer_pool_dump_pct=40

The innodb_buffer_pool_dump_pct default value was changed from 100 (dump all pages) to 25 (dump 25% of most-recently-used pages) in MySQL 5.7 when innodb_buffer_pool_dump_at_shutdown and innodb_buffer_pool_load_at_startup were enabled by default.

Saving the Buffer Pool State at Shutdown and Restoring it at Startup

To save the state of the buffer pool at server shutdown, issue the following statement prior to shutting down the server:

SET GLOBAL innodb_buffer_pool_dump_at_shutdown=ON;

innodb_buffer_pool_dump_at_shutdown is enabled by default.

To restore the buffer pool state at server startup, specify the --innodb-buffer-pool-load-at-startup option when starting the server:

mysqld --innodb-buffer-pool-load-at-startup=ON;

innodb_buffer_pool_load_at_startup is enabled by default.

Saving and Restoring the Buffer Pool State Online

To save the state of the buffer pool while MySQL server is running, issue the following statement:

SET GLOBAL innodb_buffer_pool_dump_now=ON;

To restore the buffer pool state while MySQL is running, issue the following statement:

SET GLOBAL innodb_buffer_pool_load_now=ON;
Displaying Buffer Pool Dump Progress

To display progress when saving the buffer pool state to disk, issue the following statement:

SHOW STATUS LIKE 'Innodb_buffer_pool_dump_status';

If the operation has not yet started, not started is returned. If the operation is complete, the completion time is printed (e.g. Finished at 110505 12:18:02). If the operation is in progress, status information is provided (e.g. Dumping buffer pool 5/7, page 237/2873).

Displaying Buffer Pool Load Progress

To display progress when loading the buffer pool, issue the following statement:

SHOW STATUS LIKE 'Innodb_buffer_pool_load_status';

If the operation has not yet started, not started is returned. If the operation is complete, the completion time is printed (e.g. Finished at 110505 12:23:24). If the operation is in progress, status information is provided (e.g. Loaded 123/22301 pages).

Aborting a Buffer Pool Load Operation

To abort a buffer pool load operation, issue the following statement:

SET GLOBAL innodb_buffer_pool_load_abort=ON;
Monitoring Buffer Pool Load Progress Using Performance Schema

You can monitor buffer pool load progress using Performance Schema.

The following example demonstrates how to enable the stage/innodb/buffer pool load stage event instrument and related consumer tables to monitor buffer pool load progress.

For information about buffer pool dump and load procedures used in this example, see Section 14.8.3.6, “Saving and Restoring the Buffer Pool State”. For information about Performance Schema stage event instruments and related consumers, see Section 25.12.5, “Performance Schema Stage Event Tables”.

  1. Enable the stage/innodb/buffer pool load instrument:

    mysql> UPDATE performance_schema.setup_instruments SET ENABLED = 'YES' 
           WHERE NAME LIKE 'stage/innodb/buffer%';
    
  2. Enable the stage event consumer tables, which include events_stages_current, events_stages_history, and events_stages_history_long.

    mysql> UPDATE performance_schema.setup_consumers SET ENABLED = 'YES' 
           WHERE NAME LIKE '%stages%';
    
  3. Dump the current buffer pool state by enabling innodb_buffer_pool_dump_now.

    mysql> SET GLOBAL innodb_buffer_pool_dump_now=ON;
    
  4. Check the buffer pool dump status to ensure that the operation has completed.

    mysql> SHOW STATUS LIKE 'Innodb_buffer_pool_dump_status'\G
    *************************** 1. row ***************************
    Variable_name: Innodb_buffer_pool_dump_status
            Value: Buffer pool(s) dump completed at 150202 16:38:58
    
  5. Load the buffer pool by enabling innodb_buffer_pool_load_now:

    mysql> SET GLOBAL innodb_buffer_pool_load_now=ON;
    
  6. Check the current status of the buffer pool load operation by querying the Performance Schema events_stages_current table. The WORK_COMPLETED column shows the number of buffer pool pages loaded. The WORK_ESTIMATED column provides an estimate of the remaining work, in pages.

    mysql> SELECT EVENT_NAME, WORK_COMPLETED, WORK_ESTIMATED
           FROM performance_schema.events_stages_current;
    +-------------------------------+----------------+----------------+
    | EVENT_NAME                    | WORK_COMPLETED | WORK_ESTIMATED |
    +-------------------------------+----------------+----------------+
    | stage/innodb/buffer pool load |           5353 |           7167 |
    +-------------------------------+----------------+----------------+
    

    The events_stages_current table returns an empty set if the buffer pool load operation has completed. In this case, you can check the events_stages_history table to view data for the completed event. For example:

    mysql> SELECT EVENT_NAME, WORK_COMPLETED, WORK_ESTIMATED 
           FROM performance_schema.events_stages_history;
    +-------------------------------+----------------+----------------+
    | EVENT_NAME                    | WORK_COMPLETED | WORK_ESTIMATED |
    +-------------------------------+----------------+----------------+
    | stage/innodb/buffer pool load |           7167 |           7167 |
    +-------------------------------+----------------+----------------+
    
Note

You can also monitor buffer pool load progress using Performance Schema when loading the buffer pool at startup using innodb_buffer_pool_load_at_startup. In this case, the stage/innodb/buffer pool load instrument and related consumers must be enabled at startup. For more information, see Section 25.3, “Performance Schema Startup Configuration”.

14.8.4 Configuring the Memory Allocator for InnoDB

When InnoDB was developed, the memory allocators supplied with operating systems and run-time libraries were often lacking in performance and scalability. At that time, there were no memory allocator libraries tuned for multi-core CPUs. Therefore, InnoDB implemented its own memory allocator in the mem subsystem. This allocator is guarded by a single mutex, which may become a bottleneck. InnoDB also implements a wrapper interface around the system allocator (malloc and free) that is likewise guarded by a single mutex.

Today, as multi-core systems have become more widely available, and as operating systems have matured, significant improvements have been made in the memory allocators provided with operating systems. These new memory allocators perform better and are more scalable than they were in the past. Most workloads, especially those where memory is frequently allocated and released (such as multi-table joins), benefit from using a more highly tuned memory allocator as opposed to the internal, InnoDB-specific memory allocator.

You can control whether InnoDB uses its own memory allocator or an allocator of the operating system, by setting the value of the system configuration parameter innodb_use_sys_malloc in the MySQL option file (my.cnf or my.ini). If set to ON or 1 (the default), InnoDB uses the malloc and free functions of the underlying system rather than manage memory pools itself. This parameter is not dynamic, and takes effect only when the system is started. To continue to use the InnoDB memory allocator, set innodb_use_sys_malloc to 0.

When the InnoDB memory allocator is disabled, InnoDB ignores the value of the parameter innodb_additional_mem_pool_size. The InnoDB memory allocator uses an additional memory pool for satisfying allocation requests without having to fall back to the system memory allocator. When the InnoDB memory allocator is disabled, all such allocation requests are fulfilled by the system memory allocator.

On Unix-like systems that use dynamic linking, replacing the memory allocator may be as easy as making the environment variable LD_PRELOAD or LD_LIBRARY_PATH point to the dynamic library that implements the allocator. On other systems, some relinking may be necessary. Please refer to the documentation of the memory allocator library of your choice.

Since InnoDB cannot track all memory use when the system memory allocator is used (innodb_use_sys_malloc is ON), the section BUFFER POOL AND MEMORY in the output of the SHOW ENGINE INNODB STATUS command only includes the buffer pool statistics in the Total memory allocated. Any memory allocated using the mem subsystem or using ut_malloc is excluded.

Note

innodb_use_sys_malloc and innodb_additional_mem_pool_size were deprecated in MySQL 5.6 and removed in MySQL 5.7.

For more information about the performance implications of InnoDB memory usage, see Section 8.10, “Buffering and Caching”.

14.8.5 Configuring Thread Concurrency for InnoDB

InnoDB uses operating system threads to process requests from user transactions. (Transactions may issue many requests to InnoDB before they commit or roll back.) On modern operating systems and servers with multi-core processors, where context switching is efficient, most workloads run well without any limit on the number of concurrent threads. Scalability improvements in MySQL 5.5 and up reduce the need to limit the number of concurrently executing threads inside InnoDB.

In situations where it is helpful to minimize context switching between threads, InnoDB can use a number of techniques to limit the number of concurrently executing operating system threads (and thus the number of requests that are processed at any one time). When InnoDB receives a new request from a user session, if the number of threads concurrently executing is at a pre-defined limit, the new request sleeps for a short time before it tries again. A request that cannot be rescheduled after the sleep is put in a first-in/first-out queue and eventually is processed. Threads waiting for locks are not counted in the number of concurrently executing threads.

You can limit the number of concurrent threads by setting the configuration parameter innodb_thread_concurrency. Once the number of executing threads reaches this limit, additional threads sleep for a number of microseconds, set by the configuration parameter innodb_thread_sleep_delay, before being placed into the queue.

Previously, it required experimentation to find the optimal value for innodb_thread_sleep_delay, and the optimal value could change depending on the workload. In MySQL 5.6.3 and higher, you can set the configuration option innodb_adaptive_max_sleep_delay to the highest value you would allow for innodb_thread_sleep_delay, and InnoDB automatically adjusts innodb_thread_sleep_delay up or down depending on the current thread-scheduling activity. This dynamic adjustment helps the thread scheduling mechanism to work smoothly during times when the system is lightly loaded and when it is operating near full capacity.

The default value for innodb_thread_concurrency and the implied default limit on the number of concurrent threads has been changed in various releases of MySQL and InnoDB. The default value of innodb_thread_concurrency is 0, so that by default there is no limit on the number of concurrently executing threads.

InnoDB causes threads to sleep only when the number of concurrent threads is limited. When there is no limit on the number of threads, all contend equally to be scheduled. That is, if innodb_thread_concurrency is 0, the value of innodb_thread_sleep_delay is ignored.

When there is a limit on the number of threads (when innodb_thread_concurrency is > 0), InnoDB reduces context switching overhead by permitting multiple requests made during the execution of a single SQL statement to enter InnoDB without observing the limit set by innodb_thread_concurrency. Since an SQL statement (such as a join) may comprise multiple row operations within InnoDB, InnoDB assigns a specified number of tickets that allow a thread to be scheduled repeatedly with minimal overhead.

When a new SQL statement starts, a thread has no tickets, and it must observe innodb_thread_concurrency. Once the thread is entitled to enter InnoDB, it is assigned a number of tickets that it can use for subsequently entering InnoDB to perform row operations. If the tickets run out, the thread is evicted, and innodb_thread_concurrency is observed again which may place the thread back into the first-in/first-out queue of waiting threads. When the thread is once again entitled to enter InnoDB, tickets are assigned again. The number of tickets assigned is specified by the global option innodb_concurrency_tickets, which is 5000 by default. A thread that is waiting for a lock is given one ticket once the lock becomes available.

The correct values of these variables depend on your environment and workload. Try a range of different values to determine what value works for your applications. Before limiting the number of concurrently executing threads, review configuration options that may improve the performance of InnoDB on multi-core and multi-processor computers, such as innodb_adaptive_hash_index.

For general performance information about MySQL thread handling, see Section 8.12.5.1, “How MySQL Handles Client Connections”.

14.8.6 Configuring the Number of Background InnoDB I/O Threads

InnoDB uses background threads to service various types of I/O requests. You can configure the number of background threads that service read and write I/O on data pages using the innodb_read_io_threads and innodb_write_io_threads configuration parameters. These parameters signify the number of background threads used for read and write requests, respectively. They are effective on all supported platforms. You can set values for these parameters in the MySQL option file (my.cnf or my.ini); you cannot change values dynamically. The default value for these parameters is 4 and permissible values range from 1-64.

The purpose of these configuration options to make InnoDB more scalable on high end systems. Each background thread can handle up to 256 pending I/O requests. A major source of background I/O is read-ahead requests. InnoDB tries to balance the load of incoming requests in such way that most background threads share work equally. InnoDB also attempts to allocate read requests from the same extent to the same thread, to increase the chances of coalescing the requests. If you have a high end I/O subsystem and you see more than 64 × innodb_read_io_threads pending read requests in SHOW ENGINE INNODB STATUS output, you might improve performance by increasing the value of innodb_read_io_threads.

On Linux systems, InnoDB uses the asynchronous I/O subsystem by default to perform read-ahead and write requests for data file pages, which changes the way that InnoDB background threads service these types of I/O requests. For more information, see Section 14.8.7, “Using Asynchronous I/O on Linux”.

For more information about InnoDB I/O performance, see Section 8.5.8, “Optimizing InnoDB Disk I/O”.

14.8.7 Using Asynchronous I/O on Linux

InnoDB uses the asynchronous I/O subsystem (native AIO) on Linux to perform read-ahead and write requests for data file pages. This behavior is controlled by the innodb_use_native_aio configuration option, which applies to Linux systems only and is enabled by default. On other Unix-like systems, InnoDB uses synchronous I/O only. Historically, InnoDB only used asynchronous I/O on Windows systems. Using the asynchronous I/O subsystem on Linux requires the libaio library.

With synchronous I/O, query threads queue I/O requests, and InnoDB background threads retrieve the queued requests one at a time, issuing a synchronous I/O call for each. When an I/O request is completed and the I/O call returns, the InnoDB background thread that is handling the request calls an I/O completion routine and returns to process the next request. The number of requests that can be processed in parallel is n, where n is the number of InnoDB background threads. The number of InnoDB background threads is controlled by innodb_read_io_threads and innodb_write_io_threads. See Section 14.8.6, “Configuring the Number of Background InnoDB I/O Threads”.

With native AIO, query threads dispatch I/O requests directly to the operating system, thereby removing the limit imposed by the number of background threads. InnoDB background threads wait for I/O events to signal completed requests. When a request is completed, a background thread calls an I/O completion routine and resumes waiting for I/O events.

The advantage of native AIO is scalability for heavily I/O-bound systems that typically show many pending reads/writes in SHOW ENGINE INNODB STATUS\G output. The increase in parallel processing when using native AIO means that the type of I/O scheduler or properties of the disk array controller have a greater influence on I/O performance.

A potential disadvantage of native AIO for heavily I/O-bound systems is lack of control over the number of I/O write requests dispatched to the operating system at once. Too many I/O write requests dispatched to the operating system for parallel processing could, in some cases, result in I/O read starvation, depending on the amount of I/O activity and system capabilities.

If a problem with the asynchronous I/O subsystem in the OS prevents InnoDB from starting, you can start the server with innodb_use_native_aio=0. This option may also be disabled automatically during startup if InnoDB detects a potential problem such as a combination of tmpdir location, tmpfs file system, and Linux kernel that does not support asynchronous I/O on tmpfs.

14.8.8 Configuring InnoDB I/O Capacity

The InnoDB master thread and other threads perform various tasks in the background, most of which are I/O related, such as flushing dirty pages from the buffer pool and writing changes from the change buffer to the appropriate secondary indexes. InnoDB attempts to perform these tasks in a way that does not adversely affect the normal working of the server. It tries to estimate the available I/O bandwidth and tune its activities to take advantage of available capacity.

The innodb_io_capacity variable defines the overall I/O capacity available to InnoDB. It should be set to approximately the number of I/O operations that the system can perform per second (IOPS). When innodb_io_capacity is set, InnoDB estimates the I/O bandwidth available for background tasks based on the set value.

You can set innodb_io_capacity to a value of 100 or greater. The default value is 200. Typically, values around 100 are appropriate for consumer-level storage devices, such as hard drives up to 7200 RPMs. Faster hard drives, RAID configurations, and solid state drives (SSDs) benefit from higher values.

Ideally, keep the setting as low as practical, but not so low that background activities fall behind. If the value is too high, data is removed from the buffer pool and change buffer too quickly for caching to provide a significant benefit. For busy systems capable of higher I/O rates, you can set a higher value to help the server handle the background maintenance work associated with a high rate of row changes. Generally, you can increase the value as a function of the number of drives used for InnoDB I/O. For example, you can increase the value on systems that use multiple disks or SSDs.

The default setting of 200 is generally sufficient for a lower-end SSD. For a higher-end, bus-attached SSD, consider a higher setting such as 1000, for example. For systems with individual 5400 RPM or 7200 RPM drives, you might lower the value to 100, which represents an estimated proportion of the I/O operations per second (IOPS) available to older-generation disk drives that can perform about 100 IOPS.

Although you can specify a high value such as a million, in practice such large values have little benefit. Generally, a value higher than 20000 is not recommended unless you are certain that lower values are insufficient for your workload.

Consider write workload when tuning innodb_io_capacity. Systems with large write workloads are likely to benefit from a higher setting. A lower setting may be sufficient for systems with a small write workload.

The innodb_io_capacity setting is not a per buffer pool instance setting. Available I/O capacity is distributed equally among buffer pool instances for flushing activities.

You can set the innodb_io_capacity value in the MySQL option file (my.cnf or my.ini) or modify it at runtime using a SET GLOBAL statement, which requires privileges sufficient to set global system variables. See Section 5.1.8.1, “System Variable Privileges”.

Ignoring I/O Capacity at Checkpoints

The innodb_flush_sync variable, which is enabled by default, causes the innodb_io_capacity setting to be ignored during bursts of I/O activity that occur at checkpoints. To adhere to the I/O rate defined by the innodb_io_capacity setting, disable innodb_flush_sync.

You can set the innodb_flush_sync value in the MySQL option file (my.cnf or my.ini) or modify it at runtime using a SET GLOBAL statement, which requires privileges sufficient to set global system variables. See Section 5.1.8.1, “System Variable Privileges”.

Configuring an I/O Capacity Maximum

If flushing activity falls behind, InnoDB can flush more aggressively, at a higher rate of I/O operations per second (IOPS) than defined by the innodb_io_capacity variable. The innodb_io_capacity_max variable defines a maximum number of IOPS performed by InnoDB background tasks in such situations.

If you specify an innodb_io_capacity setting at startup but do not specify a value for innodb_io_capacity_max, innodb_io_capacity_max defaults to twice the value of innodb_io_capacity, with a minimum value of 2000.

When configuring innodb_io_capacity_max, twice the innodb_io_capacity is often a good starting point. The default value of 2000 is intended for workloads that use an SSD or more than one regular disk drive. A setting of 2000 is likely too high for workloads that do not use SSDs or multiple disk drives, and could allow too much flushing. For a single regular disk drive, a setting between 200 and 400 is recommended. For a high-end, bus-attached SSD, consider a higher setting such as 2500. As with the innodb_io_capacity setting, keep the setting as low as practical, but not so low that InnoDB cannot sufficiently extend rate of IOPS beyond the innodb_io_capacity setting.

Consider write workload when tuning innodb_io_capacity_max. Systems with large write workloads may benefit from a higher setting. A lower setting may be sufficient for systems with a small write workload.

innodb_io_capacity_max cannot be set to a value lower than the innodb_io_capacity value.

Setting innodb_io_capacity_max to DEFAULT using a SET statement (SET GLOBAL innodb_io_capacity_max=DEFAULT) sets innodb_io_capacity_max to the maximum value.

The innodb_io_capacity_max limit applies to all buffer pool instances. It is not a per buffer pool instance setting.

14.8.9 Configuring Spin Lock Polling

InnoDB mutexes and rw-locks are typically reserved for short intervals. On a multi-core system, it can be more efficient for a thread to continuously check if it can acquire a mutex or rw-lock for a period of time before it sleeps. If the mutex or rw-lock becomes available during this period, the thread can continue immediately, in the same time slice. However, too-frequent polling of a shared object such as a mutex or rw-lock by multiple threads can cause cache ping pong, which results in processors invalidating portions of each other's cache. InnoDB minimizes this issue by forcing a random delay between polls to desychronize polling activity. The random delay is implemented as a spin-wait loop.

The duration of a spin-wait loop is determined by the number of PAUSE instructions that occur in the loop. That number is generated by randomly selecting an integer ranging from 0 up to but not including the innodb_spin_wait_delay value, and multiplying that value by 50. For example, an integer is randomly selected from the following range for an innodb_spin_wait_delay setting of 6:

{0,1,2,3,4,5}

The selected integer is multiplied by 50, resulting in one of six possible PAUSE instruction values:

{0,50,100,150,200,250}

For that set of values, 250 is the maximum number of PAUSE instructions that can occur in a spin-wait loop. An innodb_spin_wait_delay setting of 5 results in a set of five possible values {0,50,100,150,200}, where 200 is the maximum number of PAUSE instructions, and so on. In this way, the innodb_spin_wait_delay setting controls the maximum delay between spin lock polls.

The duration of the delay loop depends on the C compiler and the target processor. In the 100MHz Pentium era, an innodb_spin_wait_delay unit was calibrated to be equivalent to one microsecond. That time equivalence did not hold, but PAUSE instruction duration has remained fairly constant in terms of processor cycles relative to other CPU instructions on most processor architectures.

On a system where all processor cores share a fast cache memory, you might reduce the maximum delay or disable the busy loop altogether by setting innodb_spin_wait_delay=0. On a system with multiple processor chips, the effect of cache invalidation can be more significant and you might increase the maximum delay.

The innodb_spin_wait_delay variable is dynamic. It can be specified in a MySQL option file or modified at runtime using a SET GLOBAL statement. Runtime modification requires privileges sufficient to set global system variables. See Section 5.1.8.1, “System Variable Privileges”.

14.8.10 Purge Configuration

InnoDB does not physically remove a row from the database immediately when you delete it with an SQL statement. A row and its index records are only physically removed when InnoDB discards the undo log record written for the deletion. This removal operation, which only occurs after the row is no longer required for multi-version concurrency control (MVCC) or rollback, is called a purge.

Purge runs on a periodic schedule. It parses and processes undo log pages from the history list, which is a list of undo log pages for committed transactions that is maintained by the InnoDB transaction system. Purge frees the undo log pages from the history list after processing them.

Configuring Purge Threads

Purge operations are performed in the background by one or more purge threads. The number of purge threads is controlled by the innodb_purge_threads variable. The default value is 4. If DML action is concentrated on a single table or a few tables, keep the setting low so that the threads do not contend with each other for access to the busy tables. If DML operations are spread across many tables, increase the setting. The maximum number of purge threads is 32.

The innodb_purge_threads setting is the maximum number of purge threads permitted. The purge system automatically adjusts the number of purge threads as necessary.

Configuring Purge Batch Size

The innodb_purge_batch_size variable defines the number of undo log pages that purge parses and processes in one batch from the history list. The default value is 300. In a multithreaded purge configuration, the coordinator purge thread divides innodb_purge_batch_size by innodb_purge_threads and assigns that number of pages to each purge thread.

The purge system also frees the undo log pages that are no longer required. It does so every 128 iterations through the undo logs. In addition to defining the number of undo log pages parsed and processed in a batch, the innodb_purge_batch_size variable defines the number of undo log pages that purge frees every 128 iterations through the undo logs.

The innodb_purge_batch_size variable is intended for advanced performance tuning and experimentation. Most users need not change innodb_purge_batch_size from its default value.

Configuring the Maximum Purge Lag

The innodb_max_purge_lag variable defines the desired maximum purge lag. When the purge lag exceeds the innodb_max_purge_lag threshold, a delay is imposed on INSERT, UPDATE, and DELETE operations to allow time for purge operations to catch up. The default value is 0, which means there is no maximum purge lag and no delay.

The InnoDB transaction system maintains a list of transactions that have index records delete-marked by UPDATE or DELETE operations. The length of the list is the purge lag. The purge lag delay is calculated by the following formula, which results in a minimum delay of 5000 microseconds:

(purge lag/innodb_max_purge_lag - 0.5) * 10000

The delay is calculated at the beginning of a purge batch

A typical innodb_max_purge_lag setting for a problematic workload might be 1000000 (1 million), assuming that transactions are small, only 100 bytes in size, and it is permissible to have 100MB of unpurged table rows.

The purge lag is presented as the History list length value in the TRANSACTIONS section of SHOW ENGINE INNODB STATUS output.

mysql> SHOW ENGINE INNODB STATUS;
...
------------
TRANSACTIONS
------------
Trx id counter 0 290328385
Purge done for trx's n:o < 0 290315608 undo n:o < 0 17
History list length 20

The History list length is typically a low value, usually less than a few thousand, but a write-heavy workload or long running transactions can cause it to increase, even for transactions that are read only. The reason that a long running transaction can cause the History list length to increase is that under a consistent read transaction isolation level such as REPEATABLE READ, a transaction must return the same result as when the read view for that transaction was created. Consequently, the InnoDB multi-version concurrency control (MVCC) system must keep a copy of the data in the undo log until all transactions that depend on that data have completed. The following are examples of long running transactions that could cause the History list length to increase:

  • A mysqldump operation that uses the --single-transaction option while there is a significant amount of concurrent DML.

  • Running a SELECT query after disabling autocommit, and forgetting to issue an explicit COMMIT or ROLLBACK.

To prevent excessive delays in extreme situations where the purge lag becomes huge, you can limit the delay by setting the innodb_max_purge_lag_delay variable. The innodb_max_purge_lag_delay variable specifies the maximum delay in microseconds for the delay imposed when the innodb_max_purge_lag threshold is exceeded. The specified innodb_max_purge_lag_delay value is an upper limit on the delay period calculated by the innodb_max_purge_lag formula.

Purge and Undo Tablespace Truncation

The purge system is also responsible for truncating undo tablespaces. You can configure the innodb_purge_rseg_truncate_frequency variable to control the frequency with which the purge system looks for undo tablespaces to truncate. For more information, see Truncating Undo Tablespaces.

14.8.11 Configuring Optimizer Statistics for InnoDB

This section describes how to configure persistent and non-persistent optimizer statistics for InnoDB tables.

Persistent optimizer statistics are persisted across server restarts, allowing for greater plan stability and more consistent query performance. Persistent optimizer statistics also provide control and flexibility with these additional benefits:

  • You can use the innodb_stats_auto_recalc configuration option to control whether statistics are updated automatically after substantial changes to a table.

  • You can use the STATS_PERSISTENT, STATS_AUTO_RECALC, and STATS_SAMPLE_PAGES clauses with CREATE TABLE and ALTER TABLE statements to configure optimizer statistics for individual tables.

  • You can query optimizer statistics data in the mysql.innodb_table_stats and mysql.innodb_index_stats tables.

  • You can view the last_update column of the mysql.innodb_table_stats and mysql.innodb_index_stats tables to see when statistics were last updated.

  • You can manually modify the mysql.innodb_table_stats and mysql.innodb_index_stats tables to force a specific query optimization plan or to test alternative plans without modifying the database.

The persistent optimizer statistics feature is enabled by default (innodb_stats_persistent=ON).

Non-persistent optimizer statistics are cleared on each server restart and after some other operations, and recomputed on the next table access. As a result, different estimates could be produced when recomputing statistics, leading to different choices in execution plans and variations in query performance.

This section also provides information about estimating ANALYZE TABLE complexity, which may be useful when attempting to achieve a balance between accurate statistics and ANALYZE TABLE execution time.

14.8.11.1 Configuring Persistent Optimizer Statistics Parameters

The persistent optimizer statistics feature improves plan stability by storing statistics to disk and making them persistent across server restarts so that the optimizer is more likely to make consistent choices each time for a given query.

Optimizer statistics are persisted to disk when innodb_stats_persistent=ON or when individual tables are defined with STATS_PERSISTENT=1. innodb_stats_persistent is enabled by default.

Formerly, optimizer statistics were cleared when restarting the server and after some other types of operations, and recomputed on the next table access. Consequently, different estimates could be produced when recalculating statistics leading to different choices in query execution plans and variation in query performance.

Persistent statistics are stored in the mysql.innodb_table_stats and mysql.innodb_index_stats tables. See Section 14.8.11.1.5, “InnoDB Persistent Statistics Tables”.

If you prefer not to persist optimizer statistics to disk, see Section 14.8.11.2, “Configuring Non-Persistent Optimizer Statistics Parameters”

14.8.11.1.1 Configuring Automatic Statistics Calculation for Persistent Optimizer Statistics

The innodb_stats_auto_recalc variable, which is enabled by default, controls whether statistics are calculated automatically when a table undergoes changes to more than 10% of its rows. You can also configure automatic statistics recalculation for individual tables by specifying the STATS_AUTO_RECALC clause when creating or altering a table.

Because of the asynchronous nature of automatic statistics recalculation, which occurs in the background, statistics may not be recalculated instantly after running a DML operation that affects more than 10% of a table, even when innodb_stats_auto_recalc is enabled. Statistics recalculation can be delayed by few seconds in some cases. If up-to-date statistics are required immediately, run ANALYZE TABLE to initiate a synchronous (foreground) recalculation of statistics.

If innodb_stats_auto_recalc is disabled, you can ensure the accuracy of optimizer statistics by executing the ANALYZE TABLE statement after making substantial changes to indexed columns. You might also consider adding ANALYZE TABLE to setup scripts that you run after loading data, and running ANALYZE TABLE on a schedule at times of low activity.

When an index is added to an existing table, or when a column is added or dropped, index statistics are calculated and added to the innodb_index_stats table regardless of the value of innodb_stats_auto_recalc.

14.8.11.1.2 Configuring Optimizer Statistics Parameters for Individual Tables

innodb_stats_persistent, innodb_stats_auto_recalc, and innodb_stats_persistent_sample_pages are global variables. To override these system-wide settings and configure optimizer statistics parameters for individual tables, you can define STATS_PERSISTENT, STATS_AUTO_RECALC, and STATS_SAMPLE_PAGES clauses in CREATE TABLE or ALTER TABLE statements.

  • STATS_PERSISTENT specifies whether to enable persistent statistics for an InnoDB table. The value DEFAULT causes the persistent statistics setting for the table to be determined by the innodb_stats_persistent setting. A value of 1 enables persistent statistics for the table, while a value of 0 disables the feature. After enabling persistent statistics for an individual table, use ANALYZE TABLE to calculate statistics after table data is loaded.

  • STATS_AUTO_RECALC specifies whether to automatically recalculate persistent statistics. The value DEFAULT causes the persistent statistics setting for the table to be determined by the innodb_stats_auto_recalc setting. A value of 1 causes statistics to be recalculated when 10% of table data has changed. A value 0 prevents automatic recalculation for the table. When using a value of 0, use ANALYZE TABLE to recalculate statistics after making substantial changes to the table.

  • STATS_SAMPLE_PAGES specifies the number of index pages to sample when cardinality and other statistics are calculated for an indexed column, by an ANALYZE TABLE operation, for example.

All three clauses are specified in the following CREATE TABLE example:

CREATE TABLE `t1` (
`id` int(8) NOT NULL auto_increment,
`data` varchar(255),
`date` datetime,
PRIMARY KEY  (`id`),
INDEX `DATE_IX` (`date`)
) ENGINE=InnoDB,
  STATS_PERSISTENT=1,
  STATS_AUTO_RECALC=1,
STATS_SAMPLE_PAGES=25;
14.8.11.1.3 Configuring the Number of Sampled Pages for InnoDB Optimizer Statistics

The optimizer uses estimated statistics about key distributions to choose the indexes for an execution plan, based on the relative selectivity of the index. Operations such as ANALYZE TABLE cause InnoDB to sample random pages from each index on a table to estimate the cardinality of the index. This sampling technique is known as a random dive.

The innodb_stats_persistent_sample_pages controls the number of sampled pages. You can adjust the setting at runtime to manage the quality of statistics estimates used by the optimizer. The default value is 20. Consider modifying the setting when encountering the following issues:

  1. Statistics are not accurate enough and the optimizer chooses suboptimal plans, as shown in EXPLAIN output. You can check the accuracy of statistics by comparing the actual cardinality of an index (determined by running SELECT DISTINCT on the index columns) with the estimates in the mysql.innodb_index_stats table.

    If it is determined that statistics are not accurate enough, the value of innodb_stats_persistent_sample_pages should be increased until the statistics estimates are sufficiently accurate. Increasing innodb_stats_persistent_sample_pages too much, however, could cause ANALYZE TABLE to run slowly.

  2. ANALYZE TABLE is too slow. In this case innodb_stats_persistent_sample_pages should be decreased until ANALYZE TABLE execution time is acceptable. Decreasing the value too much, however, could lead to the first problem of inaccurate statistics and suboptimal query execution plans.

    If a balance cannot be achieved between accurate statistics and ANALYZE TABLE execution time, consider decreasing the number of indexed columns in the table or limiting the number of partitions to reduce ANALYZE TABLE complexity. The number of columns in the table's primary key is also important to consider, as primary key columns are appended to each nonunique index.

    For related information, see Section 14.8.11.3, “Estimating ANALYZE TABLE Complexity for InnoDB Tables”.

14.8.11.1.4 Including Delete-marked Records in Persistent Statistics Calculations

By default, InnoDB reads uncommitted data when calculating statistics. In the case of an uncommitted transaction that deletes rows from a table, delete-marked records are excluded when calculating row estimates and index statistics, which can lead to non-optimal execution plans for other transactions that are operating on the table concurrently using a transaction isolation level other than READ UNCOMMITTED. To avoid this scenario, innodb_stats_include_delete_marked can be enabled to ensure that delete-marked records are included when calculating persistent optimizer statistics.

When innodb_stats_include_delete_marked is enabled, ANALYZE TABLE considers delete-marked records when recalculating statistics.

innodb_stats_include_delete_marked is a global setting that affects all InnoDB tables, and it is only applicable to persistent optimizer statistics.

innodb_stats_include_delete_marked was introduced in MySQL 5.7.16.

14.8.11.1.5 InnoDB Persistent Statistics Tables

The persistent statistics feature relies on the internally managed tables in the mysql database, named innodb_table_stats and innodb_index_stats. These tables are set up automatically in all install, upgrade, and build-from-source procedures.

Table 14.4 Columns of innodb_table_stats

Column name Description
database_name Database name
table_name Table name, partition name, or subpartition name
last_update A timestamp indicating the last time the row was updated
n_rows The number of rows in the table
clustered_index_size The size of the primary index, in pages
sum_of_other_index_sizes The total size of other (non-primary) indexes, in pages

Table 14.5 Columns of innodb_index_stats

Column name Description
database_name Database name
table_name Table name, partition name, or subpartition name
index_name Index name
last_update A timestamp indicating the last time that InnoDB updated this row
stat_name The name of the statistic, whose value is reported in the stat_value column
stat_value The value of the statistic that is named in stat_name column
sample_size The number of pages sampled for the estimate provided in the stat_value column
stat_description Description of the statistic that is named in the stat_name column

The innodb_table_stats and innodb_index_stats tables include a last_update column that shows when index statistics were last updated:

mysql> SELECT * FROM innodb_table_stats \G
*************************** 1. row ***************************
           database_name: sakila
              table_name: actor
             last_update: 2014-05-28 16:16:44
                  n_rows: 200
    clustered_index_size: 1
sum_of_other_index_sizes: 1
...
mysql> SELECT * FROM innodb_index_stats \G
*************************** 1. row ***************************
   database_name: sakila
      table_name: actor
      index_name: PRIMARY
     last_update: 2014-05-28 16:16:44
       stat_name: n_diff_pfx01
      stat_value: 200
     sample_size: 1
     ...

The innodb_table_stats and innodb_index_stats tables can be updated manually, which makes it possible to force a specific query optimization plan or test alternative plans without modifying the database. If you manually update statistics, use the FLUSH TABLE tbl_name statement to load the updated statistics.

Persistent statistics are considered local information, because they relate to the server instance. The innodb_table_stats and innodb_index_stats tables are therefore not replicated when automatic statistics recalculation takes place. If you run ANALYZE TABLE to initiate a synchronous recalculation of statistics, this statement is replicated (unless you suppressed logging for it), and recalculation takes place on the replication slaves.

14.8.11.1.6 InnoDB Persistent Statistics Tables Example

The innodb_table_stats table contains one row for each table. The following example demonstrates the type of data collected.

Table t1 contains a primary index (columns a, b) secondary index (columns c, d), and unique index (columns e, f):

CREATE TABLE t1 (
a INT, b INT, c INT, d INT, e INT, f INT,
PRIMARY KEY (a, b), KEY i1 (c, d), UNIQUE KEY i2uniq (e, f)
) ENGINE=INNODB;

After inserting five rows of sample data, table t1 appears as follows:

mysql> SELECT * FROM t1;
+---+---+------+------+------+------+
| a | b | c    | d    | e    | f    |
+---+---+------+------+------+------+
| 1 | 1 |   10 |   11 |  100 |  101 |
| 1 | 2 |   10 |   11 |  200 |  102 |
| 1 | 3 |   10 |   11 |  100 |  103 |
| 1 | 4 |   10 |   12 |  200 |  104 |
| 1 | 5 |   10 |   12 |  100 |  105 |
+---+---+------+------+------+------+

To immediately update statistics, run ANALYZE TABLE (if innodb_stats_auto_recalc is enabled, statistics are updated automatically within a few seconds assuming that the 10% threshold for changed table rows is reached):

mysql> ANALYZE TABLE t1;
+---------+---------+----------+----------+
| Table   | Op      | Msg_type | Msg_text |
+---------+---------+----------+----------+
| test.t1 | analyze | status   | OK       |
+---------+---------+----------+----------+

Table statistics for table t1 show the last time InnoDB updated the table statistics (2014-03-14 14:36:34), the number of rows in the table (5), the clustered index size (1 page), and the combined size of the other indexes (2 pages).

mysql> SELECT * FROM mysql.innodb_table_stats WHERE table_name like 't1'\G
*************************** 1. row ***************************
           database_name: test
              table_name: t1
             last_update: 2014-03-14 14:36:34
                  n_rows: 5
    clustered_index_size: 1
sum_of_other_index_sizes: 2

The innodb_index_stats table contains multiple rows for each index. Each row in the innodb_index_stats table provides data related to a particular index statistic which is named in the stat_name column and described in the stat_description column. For example:

mysql> SELECT index_name, stat_name, stat_value, stat_description
       FROM mysql.innodb_index_stats WHERE table_name like 't1';
+------------+--------------+------------+-----------------------------------+
| index_name | stat_name    | stat_value | stat_description                  |
+------------+--------------+------------+-----------------------------------+
| PRIMARY    | n_diff_pfx01 |          1 | a                                 |
| PRIMARY    | n_diff_pfx02 |          5 | a,b                               |
| PRIMARY    | n_leaf_pages |          1 | Number of leaf pages in the index |
| PRIMARY    | size         |          1 | Number of pages in the index      |
| i1         | n_diff_pfx01 |          1 | c                                 |
| i1         | n_diff_pfx02 |          2 | c,d                               |
| i1         | n_diff_pfx03 |          2 | c,d,a                             |
| i1         | n_diff_pfx04 |          5 | c,d,a,b                           |
| i1         | n_leaf_pages |          1 | Number of leaf pages in the index |
| i1         | size         |          1 | Number of pages in the index      |
| i2uniq     | n_diff_pfx01 |          2 | e                                 |
| i2uniq     | n_diff_pfx02 |          5 | e,f                               |
| i2uniq     | n_leaf_pages |          1 | Number of leaf pages in the index |
| i2uniq     | size         |          1 | Number of pages in the index      |
+------------+--------------+------------+-----------------------------------+

The stat_name column shows the following types of statistics:

  • size: Where stat_name=size, the stat_value column displays the total number of pages in the index.

  • n_leaf_pages: Where stat_name=n_leaf_pages, the stat_value column displays the number of leaf pages in the index.

  • n_diff_pfxNN: Where stat_name=n_diff_pfx01, the stat_value column displays the number of distinct values in the first column of the index. Where stat_name=n_diff_pfx02, the stat_value column displays the number of distinct values in the first two columns of the index, and so on. Where stat_name=n_diff_pfxNN, the stat_description column shows a comma separated list of the index columns that are counted.

To further illustrate the n_diff_pfxNN statistic, which provides cardinality data, consider once again the t1 table example that was introduced previously. As shown below, the t1 table is created with a primary index (columns a, b), a secondary index (columns c, d), and a unique index (columns e, f):

CREATE TABLE t1 (
  a INT, b INT, c INT, d INT, e INT, f INT,
  PRIMARY KEY (a, b), KEY i1 (c, d), UNIQUE KEY i2uniq (e, f)
) ENGINE=INNODB;

After inserting five rows of sample data, table t1 appears as follows:

mysql> SELECT * FROM t1;
+---+---+------+------+------+------+
| a | b | c    | d    | e    | f    |
+---+---+------+------+------+------+
| 1 | 1 |   10 |   11 |  100 |  101 |
| 1 | 2 |   10 |   11 |  200 |  102 |
| 1 | 3 |   10 |   11 |  100 |  103 |
| 1 | 4 |   10 |   12 |  200 |  104 |
| 1 | 5 |   10 |   12 |  100 |  105 |
+---+---+------+------+------+------+

When you query the index_name, stat_name, stat_value, and stat_description, where stat_name LIKE 'n_diff%', the following result set is returned:

mysql> SELECT index_name, stat_name, stat_value, stat_description
       FROM mysql.innodb_index_stats
       WHERE table_name like 't1' AND stat_name LIKE 'n_diff%';
+------------+--------------+------------+------------------+
| index_name | stat_name    | stat_value | stat_description |
+------------+--------------+------------+------------------+
| PRIMARY    | n_diff_pfx01 |          1 | a                |
| PRIMARY    | n_diff_pfx02 |          5 | a,b              |
| i1         | n_diff_pfx01 |          1 | c                |
| i1         | n_diff_pfx02 |          2 | c,d              |
| i1         | n_diff_pfx03 |          2 | c,d,a            |
| i1         | n_diff_pfx04 |          5 | c,d,a,b          |
| i2uniq     | n_diff_pfx01 |          2 | e                |
| i2uniq     | n_diff_pfx02 |          5 | e,f              |
+------------+--------------+------------+------------------+

For the PRIMARY index, there are two n_diff% rows. The number of rows is equal to the number of columns in the index.

Note

For nonunique indexes, InnoDB appends the columns of the primary key.

  • Where index_name=PRIMARY and stat_name=n_diff_pfx01, the stat_value is 1, which indicates that there is a single distinct value in the first column of the index (column a). The number of distinct values in column a is confirmed by viewing the data in column a in table t1, in which there is a single distinct value (1). The counted column (a) is shown in the stat_description column of the result set.

  • Where index_name=PRIMARY and stat_name=n_diff_pfx02, the stat_value is 5, which indicates that there are five distinct values in the two columns of the index (a,b). The number of distinct values in columns a and b is confirmed by viewing the data in columns a and b in table t1, in which there are five distinct values: (1,1), (1,2), (1,3), (1,4) and (1,5). The counted columns (a,b) are shown in the stat_description column of the result set.

For the secondary index (i1), there are four n_diff% rows. Only two columns are defined for the secondary index (c,d) but there are four n_diff% rows for the secondary index because InnoDB suffixes all nonunique indexes with the primary key. As a result, there are four n_diff% rows instead of two to account for the both the secondary index columns (c,d) and the primary key columns (a,b).

  • Where index_name=i1 and stat_name=n_diff_pfx01, the stat_value is 1, which indicates that there is a single distinct value in the first column of the index (column c). The number of distinct values in column c is confirmed by viewing the data in column c in table t1, in which there is a single distinct value: (10). The counted column (c) is shown in the stat_description column of the result set.

  • Where index_name=i1 and stat_name=n_diff_pfx02, the stat_value is 2, which indicates that there are two distinct values in the first two columns of the index (c,d). The number of distinct values in columns c an d is confirmed by viewing the data in columns c and d in table t1, in which there are two distinct values: (10,11) and (10,12). The counted columns (c,d) are shown in the stat_description column of the result set.

  • Where index_name=i1 and stat_name=n_diff_pfx03, the stat_value is 2, which indicates that there are two distinct values in the first three columns of the index (c,d,a). The number of distinct values in columns c, d, and a is confirmed by viewing the data in column c, d, and a in table t1, in which there are two distinct values: (10,11,1) and (10,12,1). The counted columns (c,d,a) are shown in the stat_description column of the result set.

  • Where index_name=i1 and stat_name=n_diff_pfx04, the stat_value is 5, which indicates that there are five distinct values in the four columns of the index (c,d,a,b). The number of distinct values in columns c, d, a and b is confirmed by viewing the data in columns c, d, a, and b in table t1, in which there are five distinct values: (10,11,1,1), (10,11,1,2), (10,11,1,3), (10,12,1,4), and (10,12,1,5). The counted columns (c,d,a,b) are shown in the stat_description column of the result set.

For the unique index (i2uniq), there are two n_diff% rows.

  • Where index_name=i2uniq and stat_name=n_diff_pfx01, the stat_value is 2, which indicates that there are two distinct values in the first column of the index (column e). The number of distinct values in column e is confirmed by viewing the data in column e in table t1, in which there are two distinct values: (100) and (200). The counted column (e) is shown in the stat_description column of the result set.

  • Where index_name=i2uniq and stat_name=n_diff_pfx02, the stat_value is 5, which indicates that there are five distinct values in the two columns of the index (e,f). The number of distinct values in columns e and f is confirmed by viewing the data in columns e and f in table t1, in which there are five distinct values: (100,101), (200,102), (100,103), (200,104), and (100,105). The counted columns (e,f) are shown in the stat_description column of the result set.

14.8.11.1.7 Retrieving Index Size Using the innodb_index_stats Table

You can retrieve the index size for tables, partitions, or subpartitions can using the innodb_index_stats table. In the following example, index sizes are retrieved for table t1. For a definition of table t1 and corresponding index statistics, see Section 14.8.11.1.6, “InnoDB Persistent Statistics Tables Example”.

mysql> SELECT SUM(stat_value) pages, index_name,
       SUM(stat_value)*@@innodb_page_size size
       FROM mysql.innodb_index_stats WHERE table_name='t1'
       AND stat_name = 'size' GROUP BY index_name;
+-------+------------+-------+
| pages | index_name | size  |
+-------+------------+-------+
|     1 | PRIMARY    | 16384 |
|     1 | i1         | 16384 |
|     1 | i2uniq     | 16384 |
+-------+------------+-------+

For partitions or subpartitions, you can use the same query with a modified WHERE clause to retrieve index sizes. For example, the following query retrieves index sizes for partitions of table t1:

mysql> SELECT SUM(stat_value) pages, index_name,
       SUM(stat_value)*@@innodb_page_size size
       FROM mysql.innodb_index_stats WHERE table_name like 't1#P%'
       AND stat_name = 'size' GROUP BY index_name;

14.8.11.2 Configuring Non-Persistent Optimizer Statistics Parameters

This section describes how to configure non-persistent optimizer statistics. Optimizer statistics are not persisted to disk when innodb_stats_persistent=OFF or when individual tables are created or altered with STATS_PERSISTENT=0. Instead, statistics are stored in memory, and are lost when the server is shut down. Statistics are also updated periodically by certain operations and under certain conditions.

As of MySQL 5.6.6, optimizer statistics are persisted to disk by default, enabled by the innodb_stats_persistent configuration option. For information about persistent optimizer statistics, see Section 14.8.11.1, “Configuring Persistent Optimizer Statistics Parameters”.

Optimizer Statistics Updates

Non-persistent optimizer statistics are updated when:

Configuring the Number of Sampled Pages

The MySQL query optimizer uses estimated statistics about key distributions to choose the indexes for an execution plan, based on the relative selectivity of the index. When InnoDB updates optimizer statistics, it samples random pages from each index on a table to estimate the cardinality of the index. (This technique is known as random dives.)

To give you control over the quality of the statistics estimate (and thus better information for the query optimizer), you can change the number of sampled pages using the parameter innodb_stats_transient_sample_pages. The default number of sampled pages is 8, which could be insufficient to produce an accurate estimate, leading to poor index choices by the query optimizer. This technique is especially important for large tables and tables used in joins. Unnecessary full table scans for such tables can be a substantial performance issue. See Section 8.2.1.20, “Avoiding Full Table Scans” for tips on tuning such queries. innodb_stats_transient_sample_pages is a global parameter that can be set at runtime.

The value of innodb_stats_transient_sample_pages affects the index sampling for all InnoDB tables and indexes when innodb_stats_persistent=0. Be aware of the following potentially significant impacts when you change the index sample size:

  • Small values like 1 or 2 can result in inaccurate estimates of cardinality.

  • Increasing the innodb_stats_transient_sample_pages value might require more disk reads. Values much larger than 8 (say, 100), can cause a significant slowdown in the time it takes to open a table or execute SHOW TABLE STATUS.

  • The optimizer might choose very different query plans based on different estimates of index selectivity.

Whatever value of innodb_stats_transient_sample_pages works best for a system, set the option and leave it at that value. Choose a value that results in reasonably accurate estimates for all tables in your database without requiring excessive I/O. Because the statistics are automatically recalculated at various times other than on execution of ANALYZE TABLE, it does not make sense to increase the index sample size, run ANALYZE TABLE, then decrease sample size again.

Smaller tables generally require fewer index samples than larger tables. If your database has many large tables, consider using a higher value for innodb_stats_transient_sample_pages than if you have mostly smaller tables.

14.8.11.3 Estimating ANALYZE TABLE Complexity for InnoDB Tables

ANALYZE TABLE complexity for InnoDB tables is dependent on:

  • The number of pages sampled, as defined by innodb_stats_persistent_sample_pages.

  • The number of indexed columns in a table

  • The number of partitions. If a table has no partitions, the number of partitions is considered to be 1.

Using these parameters, an approximate formula for estimating ANALYZE TABLE complexity would be:

The value of innodb_stats_persistent_sample_pages * number of indexed columns in a table * the number of partitions

Typically, the greater the resulting value, the greater the execution time for ANALYZE TABLE.

Note

innodb_stats_persistent_sample_pages defines the number of pages sampled at a global level. To set the number of pages sampled for an individual table, use the STATS_SAMPLE_PAGES option with CREATE TABLE or ALTER TABLE. For more information, see Section 14.8.11.1, “Configuring Persistent Optimizer Statistics Parameters”.

If innodb_stats_persistent=OFF, the number of pages sampled is defined by innodb_stats_transient_sample_pages. See Section 14.8.11.2, “Configuring Non-Persistent Optimizer Statistics Parameters” for additional information.

For a more in-depth approach to estimating ANALYZE TABLE complexity, consider the following example.

In Big O notation, ANALYZE TABLE complexity is described as:

 
O(n_sample
  * (n_cols_in_uniq_i
     + n_cols_in_non_uniq_i
     + n_cols_in_pk * (1 + n_non_uniq_i))
  * n_part)          

where:

  • n_sample is the number of pages sampled (defined by innodb_stats_persistent_sample_pages)

  • n_cols_in_uniq_i is total number of all columns in all unique indexes (not counting the primary key columns)

  • n_cols_in_non_uniq_i is the total number of all columns in all nonunique indexes

  • n_cols_in_pk is the number of columns in the primary key (if a primary key is not defined, InnoDB creates a single column primary key internally)

  • n_non_uniq_i is the number of nonunique indexes in the table

  • n_part is the number of partitions. If no partitions are defined, the table is considered to be a single partition.

Now, consider the following table (table t), which has a primary key (2 columns), a unique index (2 columns), and two nonunique indexes (two columns each):

CREATE TABLE t (
  a INT,
  b INT,
  c INT,
  d INT,
  e INT,
  f INT,
  g INT,
  h INT,
  PRIMARY KEY (a, b),
  UNIQUE KEY i1uniq (c, d),
  KEY i2nonuniq (e, f),
  KEY i3nonuniq (g, h)
);

For the column and index data required by the algorithm described above, query the mysql.innodb_index_stats persistent index statistics table for table t. The n_diff_pfx% statistics show the columns that are counted for each index. For example, columns a and b are counted for the primary key index. For the nonunique indexes, the primary key columns (a,b) are counted in addition to the user defined columns.

Note

For additional information about the InnoDB persistent statistics tables, see Section 14.8.11.1, “Configuring Persistent Optimizer Statistics Parameters”

mysql> SELECT index_name, stat_name, stat_description
       FROM mysql.innodb_index_stats WHERE
       database_name='test' AND
       table_name='t' AND
       stat_name like 'n_diff_pfx%';
  +------------+--------------+------------------+
  | index_name | stat_name    | stat_description |
  +------------+--------------+------------------+
  | PRIMARY    | n_diff_pfx01 | a                |
  | PRIMARY    | n_diff_pfx02 | a,b              |
  | i1uniq     | n_diff_pfx01 | c                |
  | i1uniq     | n_diff_pfx02 | c,d              |
  | i2nonuniq  | n_diff_pfx01 | e                |
  | i2nonuniq  | n_diff_pfx02 | e,f              |
  | i2nonuniq  | n_diff_pfx03 | e,f,a            |
  | i2nonuniq  | n_diff_pfx04 | e,f,a,b          |
  | i3nonuniq  | n_diff_pfx01 | g                |
  | i3nonuniq  | n_diff_pfx02 | g,h              |
  | i3nonuniq  | n_diff_pfx03 | g,h,a            |
  | i3nonuniq  | n_diff_pfx04 | g,h,a,b          |
  +------------+--------------+------------------+   

Based on the index statistics data shown above and the table definition, the following values can be determined:

  • n_cols_in_uniq_i, the total number of all columns in all unique indexes not counting the primary key columns, is 2 (c and d)

  • n_cols_in_non_uniq_i, the total number of all columns in all nonunique indexes, is 4 (e, f, g and h)

  • n_cols_in_pk, the number of columns in the primary key, is 2 (a and b)

  • n_non_uniq_i, the number of nonunique indexes in the table, is 2 (i2nonuniq and i3nonuniq))

  • n_part, the number of partitions, is 1.

You can now calculate innodb_stats_persistent_sample_pages * (2 + 4 + 2 * (1 + 2)) * 1 to determine the number of leaf pages that are scanned. With innodb_stats_persistent_sample_pages set to the default value of 20, and with a default page size of 16 KiB (innodb_page_size=16384), you can then estimate that 20 * 12 * 16384 bytes are read for table t, or about 4 MiB.

Note

All 4 MiB may not be read from disk, as some leaf pages may already be cached in the buffer pool.

14.8.12 Configuring the Merge Threshold for Index Pages

You can configure the MERGE_THRESHOLD value for index pages. If the page-full percentage for an index page falls below the MERGE_THRESHOLD value when a row is deleted or when a row is shortened by an UPDATE operation, InnoDB attempts to merge the index page with a neighboring index page. The default MERGE_THRESHOLD value is 50, which is the previously hardcoded value. The minimum MERGE_THRESHOLD value is 1 and the maximum value is 50.

When the page-full percentage for an index page falls below 50%, which is the default MERGE_THRESHOLD setting, InnoDB attempts to merge the index page with a neighboring page. If both pages are close to 50% full, a page split can occur soon after the pages are merged. If this merge-split behavior occurs frequently, it can have an adverse affect on performance. To avoid frequent merge-splits, you can lower the MERGE_THRESHOLD value so that InnoDB attempts page merges at a lower page-full percentage. Merging pages at a lower page-full percentage leaves more room in index pages and helps reduce merge-split behavior.

The MERGE_THRESHOLD for index pages can be defined for a table or for individual indexes. A MERGE_THRESHOLD value defined for an individual index takes priority over a MERGE_THRESHOLD value defined for the table. If undefined, the MERGE_THRESHOLD value defaults to 50.

Setting MERGE_THRESHOLD for a Table

You can set the MERGE_THRESHOLD value for a table using the table_option COMMENT clause of the CREATE TABLE statement. For example:

CREATE TABLE t1 (
   id INT,
  KEY id_index (id)
) COMMENT='MERGE_THRESHOLD=45';

You can also set the MERGE_THRESHOLD value for an existing table using the table_option COMMENT clause with ALTER TABLE:

CREATE TABLE t1 (
   id INT,
  KEY id_index (id)
);

ALTER TABLE t1 COMMENT='MERGE_THRESHOLD=40';    

Setting MERGE_THRESHOLD for Individual Indexes

To set the MERGE_THRESHOLD value for an individual index, you can use the index_option COMMENT clause with CREATE TABLE, ALTER TABLE, or CREATE INDEX, as shown in the following examples:

  • Setting MERGE_THRESHOLD for an individual index using CREATE TABLE:

    CREATE TABLE t1 (
       id INT,
      KEY id_index (id) COMMENT 'MERGE_THRESHOLD=40'
    );
  • Setting MERGE_THRESHOLD for an individual index using ALTER TABLE:

    CREATE TABLE t1 (
       id INT,
      KEY id_index (id)
    );
    
    ALTER TABLE t1 DROP KEY id_index;
    ALTER TABLE t1 ADD KEY id_index (id) COMMENT 'MERGE_THRESHOLD=40';
  • Setting MERGE_THRESHOLD for an individual index using CREATE INDEX:

    CREATE TABLE t1 (id INT);
    CREATE INDEX id_index ON t1 (id) COMMENT 'MERGE_THRESHOLD=40';
Note

You cannot modify the MERGE_THRESHOLD value at the index level for GEN_CLUST_INDEX, which is the clustered index created by InnoDB when an InnoDB table is created without a primary key or unique key index. You can only modify the MERGE_THRESHOLD value for GEN_CLUST_INDEX by setting MERGE_THRESHOLD for the table.

Querying the MERGE_THRESHOLD Value for an Index

The current MERGE_THRESHOLD value for an index can be obtained by querying the INNODB_SYS_INDEXES table. For example:

mysql> SELECT * FROM INFORMATION_SCHEMA.INNODB_SYS_INDEXES WHERE NAME='id_index' \G
*************************** 1. row ***************************
       INDEX_ID: 91
           NAME: id_index
       TABLE_ID: 68
           TYPE: 0
       N_FIELDS: 1
        PAGE_NO: 4
          SPACE: 57
MERGE_THRESHOLD: 40

You can use SHOW CREATE TABLE to view the MERGE_THRESHOLD value for a table, if explicitly defined using the table_option COMMENT clause:

mysql> SHOW CREATE TABLE t2 \G
*************************** 1. row ***************************
       Table: t2
Create Table: CREATE TABLE `t2` (
  `id` int(11) DEFAULT NULL,
  KEY `id_index` (`id`) COMMENT 'MERGE_THRESHOLD=40'
) ENGINE=InnoDB DEFAULT CHARSET=latin1
Note

A MERGE_THRESHOLD value defined at the index level takes priority over a MERGE_THRESHOLD value defined for the table. If undefined, MERGE_THRESHOLD defaults to 50% (MERGE_THRESHOLD=50, which is the previously hardcoded value.

Likewise, you can use SHOW INDEX to view the MERGE_THRESHOLD value for an index, if explicitly defined using the index_option COMMENT clause:

mysql> SHOW INDEX FROM t2 \G
*************************** 1. row ***************************
        Table: t2
   Non_unique: 1
     Key_name: id_index
 Seq_in_index: 1
  Column_name: id
    Collation: A
  Cardinality: 0
     Sub_part: NULL
       Packed: NULL
         Null: YES
   Index_type: BTREE
      Comment:
Index_comment: MERGE_THRESHOLD=40

Measuring the Effect of MERGE_THRESHOLD Settings

The INNODB_METRICS table provides two counters that can be used to measure the effect of a MERGE_THRESHOLD setting on index page merges.

mysql> SELECT NAME, COMMENT FROM INFORMATION_SCHEMA.INNODB_METRICS
       WHERE NAME like '%index_page_merge%';
+-----------------------------+----------------------------------------+
| NAME                        | COMMENT                                |
+-----------------------------+----------------------------------------+
| index_page_merge_attempts   | Number of index page merge attempts    |
| index_page_merge_successful | Number of successful index page merges |
+-----------------------------+----------------------------------------+

When lowering the MERGE_THRESHOLD value, the objectives are:

  • A smaller number of page merge attempts and successful page merges

  • A similar number of page merge attempts and successful page merges

A MERGE_THRESHOLD setting that is too small could result in large data files due to an excessive amount of empty page space.

For information about using INNODB_METRICS counters, see Section 14.16.6, “InnoDB INFORMATION_SCHEMA Metrics Table”.

14.9 InnoDB Table and Page Compression

This section provides information about the InnoDB table compression and InnoDB page compression features. The page compression feature is referred to as transparent page compression.

Using the compression features of InnoDB, you can create tables where the data is stored in compressed form. Compression can help to improve both raw performance and scalability. The compression means less data is transferred between disk and memory, and takes up less space on disk and in memory. The benefits are amplified for tables with secondary indexes, because index data is compressed also. Compression can be especially important for SSD storage devices, because they tend to have lower capacity than HDD devices.

14.9.1 InnoDB Table Compression

This section describes InnoDB table compression, which is supported with InnoDB tables that reside in file_per_table tablespaces or general tablespaces. Table compression is enabled using the ROW_FORMAT=COMPRESSED attribute with CREATE TABLE or ALTER TABLE.

14.9.1.1 Overview of Table Compression

Because processors and cache memories have increased in speed more than disk storage devices, many workloads are disk-bound. Data compression enables smaller database size, reduced I/O, and improved throughput, at the small cost of increased CPU utilization. Compression is especially valuable for read-intensive applications, on systems with enough RAM to keep frequently used data in memory.

An InnoDB table created with ROW_FORMAT=COMPRESSED can use a smaller page size on disk than the configured innodb_page_size value. Smaller pages require less I/O to read from and write to disk, which is especially valuable for SSD devices.

The compressed page size is specified through the CREATE TABLE or ALTER TABLE KEY_BLOCK_SIZE parameter. The different page size requires that the table be placed in a file-per-table tablespace or general tablespace rather than in the system tablespace, as the system tablespace cannot store compressed tables. For more information, see Section 14.6.3.2, “File-Per-Table Tablespaces”, and Section 14.6.3.3, “General Tablespaces”.

The level of compression is the same regardless of the KEY_BLOCK_SIZE value. As you specify smaller values for KEY_BLOCK_SIZE, you get the I/O benefits of increasingly smaller pages. But if you specify a value that is too small, there is additional overhead to reorganize the pages when data values cannot be compressed enough to fit multiple rows in each page. There is a hard limit on how small KEY_BLOCK_SIZE can be for a table, based on the lengths of the key columns for each of its indexes. Specify a value that is too small, and the CREATE TABLE or ALTER TABLE statement fails.

In the buffer pool, the compressed data is held in small pages, with a page size based on the KEY_BLOCK_SIZE value. For extracting or updating the column values, MySQL also creates an uncompressed page in the buffer pool with the uncompressed data. Within the buffer pool, any updates to the uncompressed page are also re-written back to the equivalent compressed page. You might need to size your buffer pool to accommodate the additional data of both compressed and uncompressed pages, although the uncompressed pages are evicted from the buffer pool when space is needed, and then uncompressed again on the next access.

14.9.1.2 Creating Compressed Tables

Compressed tables can be created in file-per-table tablespaces or in general tablespaces. Table compression is not available for the InnoDB system tablespace. The system tablespace (space 0, the .ibdata files) can contain user-created tables, but it also contains internal system data, which is never compressed. Thus, compression applies only to tables (and indexes) stored in file-per-table or general tablespaces.

Creating a Compressed Table in File-Per-Table Tablespace

To create a compressed table in a file-per-table tablespace, innodb_file_per_table must be enabled (the default in MySQL 5.6.6) and innodb_file_format must be set to Barracuda. You can set these parameters in the MySQL configuration file (my.cnf or my.ini) or dynamically, using a SET statement.

After the innodb_file_per_table and innodb_file_format options are configured, specify the ROW_FORMAT=COMPRESSED clause or KEY_BLOCK_SIZE clause, or both, in a CREATE TABLE or ALTER TABLE statement to create a compressed table in a file-per-table tablespace.

For example, you might use the following statements:

SET GLOBAL innodb_file_per_table=1;
SET GLOBAL innodb_file_format=Barracuda;
CREATE TABLE t1
 (c1 INT PRIMARY KEY)
 ROW_FORMAT=COMPRESSED
KEY_BLOCK_SIZE=8;
Creating a Compressed Table in a General Tablespace

To create a compressed table in a general tablespace, FILE_BLOCK_SIZE must be defined for the general tablespace, which is specified when the tablespace is created. The FILE_BLOCK_SIZE value must be a valid compressed page size in relation to the innodb_page_size value, and the page size of the compressed table, defined by the CREATE TABLE or ALTER TABLE KEY_BLOCK_SIZE clause, must be equal to FILE_BLOCK_SIZE/1024. For example, if innodb_page_size=16384 and FILE_BLOCK_SIZE=8192, the KEY_BLOCK_SIZE of the table must be 8. For more information, see Section 14.6.3.3, “General Tablespaces”.

The following example demonstrates creating a general tablespace and adding a compressed table. The example assumes a default innodb_page_size of 16K. The FILE_BLOCK_SIZE of 8192 requires that the compressed table have a KEY_BLOCK_SIZE of 8.

mysql> CREATE TABLESPACE `ts2` ADD DATAFILE 'ts2.ibd' FILE_BLOCK_SIZE = 8192 Engine=InnoDB;

mysql> CREATE TABLE t4 (c1 INT PRIMARY KEY) TABLESPACE ts2 ROW_FORMAT=COMPRESSED KEY_BLOCK_SIZE=8;
Notes
  • If you specify ROW_FORMAT=COMPRESSED, you can omit KEY_BLOCK_SIZE; the KEY_BLOCK_SIZE setting defaults to half the innodb_page_size value.

  • If you specify a valid KEY_BLOCK_SIZE value, you can omit ROW_FORMAT=COMPRESSED; compression is enabled automatically.

  • To determine the best value for KEY_BLOCK_SIZE, typically you create several copies of the same table with different values for this clause, then measure the size of the resulting .ibd files and see how well each performs with a realistic workload. For general tablespaces, keep in mind that dropping a table does not reduce the size of the general tablespace .ibd file, nor does it return disk space to the operating system. For more information, see Section 14.6.3.3, “General Tablespaces”.

  • The KEY_BLOCK_SIZE value is treated as a hint; a different size could be used by InnoDB if necessary. For file-per-table tablespaces, the KEY_BLOCK_SIZE can only be less than or equal to the innodb_page_size value. If you specify a value greater than the innodb_page_size value, the specified value is ignored, a warning is issued, and KEY_BLOCK_SIZE is set to half of the innodb_page_size value. If innodb_strict_mode=ON, specifying an invalid KEY_BLOCK_SIZE value returns an error. For general tablespaces, valid KEY_BLOCK_SIZE values depend on the FILE_BLOCK_SIZE setting of the tablespace. For more information, see Section 14.6.3.3, “General Tablespaces”.

  • 32KB and 64KB page sizes do not support compression. For more information, refer to the innodb_page_size documentation.

  • The default uncompressed size of InnoDB data pages is 16KB. Depending on the combination of option values, MySQL uses a page size of 1KB, 2KB, 4KB, 8KB, or 16KB for the tablespace data file (.ibd file). The actual compression algorithm is not affected by the KEY_BLOCK_SIZE value; the value determines how large each compressed chunk is, which in turn affects how many rows can be packed into each compressed page.

  • When creating a compressed table in a file-per-table tablespace, setting KEY_BLOCK_SIZE equal to the InnoDB page size does not typically result in much compression. For example, setting KEY_BLOCK_SIZE=16 typically would not result in much compression, since the normal InnoDB page size is 16KB. This setting may still be useful for tables with many long BLOB, VARCHAR or TEXT columns, because such values often do compress well, and might therefore require fewer overflow pages as described in Section 14.9.1.5, “How Compression Works for InnoDB Tables”. For general tablespaces, a KEY_BLOCK_SIZE value equal to the InnoDB page size is not permitted. For more information, see Section 14.6.3.3, “General Tablespaces”.

  • All indexes of a table (including the clustered index) are compressed using the same page size, as specified in the CREATE TABLE or ALTER TABLE statement. Table attributes such as ROW_FORMAT and KEY_BLOCK_SIZE are not part of the CREATE INDEX syntax for InnoDB tables, and are ignored if they are specified (although, if specified, they will appear in the output of the SHOW CREATE TABLE statement).

  • For performance-related configuration options, see Section 14.9.1.3, “Tuning Compression for InnoDB Tables”.

Restrictions on Compressed Tables
  • MySQL versions prior to 5.1 cannot process compressed tables.

  • Compressed tables cannot be stored in the InnoDB system tablespace.

  • General tablespaces can contain multiple tables, but compressed and uncompressed tables cannot coexist within the same general tablespace.

  • Compression applies to an entire table and all its associated indexes, not to individual rows, despite the clause name ROW_FORMAT.

14.9.1.3 Tuning Compression for InnoDB Tables

Most often, the internal optimizations described in InnoDB Data Storage and Compression ensure that the system runs well with compressed data. However, because the efficiency of compression depends on the nature of your data, you can make decisions that affect the performance of compressed tables:

  • Which tables to compress.

  • What compressed page size to use.

  • Whether to adjust the size of the buffer pool based on run-time performance characteristics, such as the amount of time the system spends compressing and uncompressing data. Whether the workload is more like a data warehouse (primarily queries) or an OLTP system (mix of queries and DML).

  • If the system performs DML operations on compressed tables, and the way the data is distributed leads to expensive compression failures at runtime, you might adjust additional advanced configuration options.

Use the guidelines in this section to help make those architectural and configuration choices. When you are ready to conduct long-term testing and put compressed tables into production, see Section 14.9.1.4, “Monitoring InnoDB Table Compression at Runtime” for ways to verify the effectiveness of those choices under real-world conditions.

When to Use Compression

In general, compression works best on tables that include a reasonable number of character string columns and where the data is read far more often than it is written. Because there are no guaranteed ways to predict whether or not compression benefits a particular situation, always test with a specific workload and data set running on a representative configuration. Consider the following factors when deciding which tables to compress.

Data Characteristics and Compression

A key determinant of the efficiency of compression in reducing the size of data files is the nature of the data itself. Recall that compression works by identifying repeated strings of bytes in a block of data. Completely randomized data is the worst case. Typical data often has repeated values, and so compresses effectively. Character strings often compress well, whether defined in CHAR, VARCHAR, TEXT or BLOB columns. On the other hand, tables containing mostly binary data (integers or floating point numbers) or data that is previously compressed (for example JPEG or PNG images) may not generally compress well, significantly or at all.

You choose whether to turn on compression for each InnoDB table. A table and all of its indexes use the same (compressed) page size. It might be that the primary key (clustered) index, which contains the data for all columns of a table, compresses more effectively than the secondary indexes. For those cases where there are long rows, the use of compression might result in long column values being stored off-page, as discussed in DYNAMIC Row Format. Those overflow pages may compress well. Given these considerations, for many applications, some tables compress more effectively than others, and you might find that your workload performs best only with a subset of tables compressed.

To determine whether or not to compress a particular table, conduct experiments. You can get a rough estimate of how efficiently your data can be compressed by using a utility that implements LZ77 compression (such as gzip or WinZip) on a copy of the .ibd file for an uncompressed table. You can expect less compression from a MySQL compressed table than from file-based compression tools, because MySQL compresses data in chunks based on the page size, 16KB by default. In addition to user data, the page format includes some internal system data that is not compressed. File-based compression utilities can examine much larger chunks of data, and so might find more repeated strings in a huge file than MySQL can find in an individual page.

Another way to test compression on a specific table is to copy some data from your uncompressed table to a similar, compressed table (having all the same indexes) in a file-per-table tablespace and look at the size of the resulting .ibd file. For example:

USE test;
SET GLOBAL innodb_file_per_table=1;
SET GLOBAL innodb_file_format=Barracuda;
SET GLOBAL autocommit=0;

-- Create an uncompressed table with a million or two rows.
CREATE TABLE big_table AS SELECT * FROM information_schema.columns;
INSERT INTO big_table SELECT * FROM big_table;
INSERT INTO big_table SELECT * FROM big_table;
INSERT INTO big_table SELECT * FROM big_table;
INSERT INTO big_table SELECT * FROM big_table;
INSERT INTO big_table SELECT * FROM big_table;
INSERT INTO big_table SELECT * FROM big_table;
INSERT INTO big_table SELECT * FROM big_table;
INSERT INTO big_table SELECT * FROM big_table;
INSERT INTO big_table SELECT * FROM big_table;
INSERT INTO big_table SELECT * FROM big_table;
COMMIT;
ALTER TABLE big_table ADD id int unsigned NOT NULL PRIMARY KEY auto_increment;

SHOW CREATE TABLE big_table\G

select count(id) from big_table;

-- Check how much space is needed for the uncompressed table.
\! ls -l data/test/big_table.ibd

CREATE TABLE key_block_size_4 LIKE big_table;
ALTER TABLE key_block_size_4 key_block_size=4 row_format=compressed;

INSERT INTO key_block_size_4 SELECT * FROM big_table;
commit;

-- Check how much space is needed for a compressed table
-- with particular compression settings.
\! ls -l data/test/key_block_size_4.ibd

This experiment produced the following numbers, which of course could vary considerably depending on your table structure and data:

-rw-rw----  1 cirrus  staff  310378496 Jan  9 13:44 data/test/big_table.ibd
-rw-rw----  1 cirrus  staff  83886080 Jan  9 15:10 data/test/key_block_size_4.ibd

To see whether compression is efficient for your particular workload:

Database Compression versus Application Compression

Decide whether to compress data in your application or in the table; do not use both types of compression for the same data. When you compress the data in the application and store the results in a compressed table, extra space savings are extremely unlikely, and the double compression just wastes CPU cycles.

Compressing in the Database

When enabled, MySQL table compression is automatic and applies to all columns and index values. The columns can still be tested with operators such as LIKE, and sort operations can still use indexes even when the index values are compressed. Because indexes are often a significant fraction of the total size of a database, compression could result in significant savings in storage, I/O or processor time. The compression and decompression operations happen on the database server, which likely is a powerful system that is sized to handle the expected load.

Compressing in the Application

If you compress data such as text in your application, before it is inserted into the database, You might save overhead for data that does not compress well by compressing some columns and not others. This approach uses CPU cycles for compression and uncompression on the client machine rather than the database server, which might be appropriate for a distributed application with many clients, or where the client machine has spare CPU cycles.

Hybrid Approach

Of course, it is possible to combine these approaches. For some applications, it may be appropriate to use some compressed tables and some uncompressed tables. It may be best to externally compress some data (and store it in uncompressed tables) and allow MySQL to compress (some of) the other tables in the application. As always, up-front design and real-life testing are valuable in reaching the right decision.

Workload Characteristics and Compression

In addition to choosing which tables to compress (and the page size), the workload is another key determinant of performance. If the application is dominated by reads, rather than updates, fewer pages need to be reorganized and recompressed after the index page runs out of room for the per-page modification log that MySQL maintains for compressed data. If the updates predominantly change non-indexed columns or those containing BLOBs or large strings that happen to be stored off-page, the overhead of compression may be acceptable. If the only changes to a table are INSERTs that use a monotonically increasing primary key, and there are few secondary indexes, there is little need to reorganize and recompress index pages. Since MySQL can delete-mark and delete rows on compressed pages in place by modifying uncompressed data, DELETE operations on a table are relatively efficient.

For some environments, the time it takes to load data can be as important as run-time retrieval. Especially in data warehouse environments, many tables may be read-only or read-mostly. In those cases, it might or might not be acceptable to pay the price of compression in terms of increased load time, unless the resulting savings in fewer disk reads or in storage cost is significant.

Fundamentally, compression works best when the CPU time is available for compressing and uncompressing data. Thus, if your workload is I/O bound, rather than CPU-bound, you might find that compression can improve overall performance. When you test your application performance with different compression configurations, test on a platform similar to the planned configuration of the production system.

Configuration Characteristics and Compression

Reading and writing database pages from and to disk is the slowest aspect of system performance. Compression attempts to reduce I/O by using CPU time to compress and uncompress data, and is most effective when I/O is a relatively scarce resource compared to processor cycles.

This is often especially the case when running in a multi-user environment with fast, multi-core CPUs. When a page of a compressed table is in memory, MySQL often uses additional memory, typically 16KB, in the buffer pool for an uncompressed copy of the page. The adaptive LRU algorithm attempts to balance the use of memory between compressed and uncompressed pages to take into account whether the workload is running in an I/O-bound or CPU-bound manner. Still, a configuration with more memory dedicated to the buffer pool tends to run better when using compressed tables than a configuration where memory is highly constrained.

Choosing the Compressed Page Size

The optimal setting of the compressed page size depends on the type and distribution of data that the table and its indexes contain. The compressed page size should always be bigger than the maximum record size, or operations may fail as noted in Compression of B-Tree Pages.

Setting the compressed page size too large wastes some space, but the pages do not have to be compressed as often. If the compressed page size is set too small, inserts or updates may require time-consuming recompression, and the B-tree nodes may have to be split more frequently, leading to bigger data files and less efficient indexing.

Typically, you set the compressed page size to 8K or 4K bytes. Given that the maximum row size for an InnoDB table is around 8K, KEY_BLOCK_SIZE=8 is usually a safe choice.

14.9.1.4 Monitoring InnoDB Table Compression at Runtime

Overall application performance, CPU and I/O utilization and the size of disk files are good indicators of how effective compression is for your application. This section builds on the performance tuning advice from Section 14.9.1.3, “Tuning Compression for InnoDB Tables”, and shows how to find problems that might not turn up during initial testing.

To dig deeper into performance considerations for compressed tables, you can monitor compression performance at runtime using the Information Schema tables described in Example 14.1, “Using the Compression Information Schema Tables”. These tables reflect the internal use of memory and the rates of compression used overall.

The INNODB_CMP table reports information about compression activity for each compressed page size (KEY_BLOCK_SIZE) in use. The information in these tables is system-wide: it summarizes the compression statistics across all compressed tables in your database. You can use this data to help decide whether or not to compress a table by examining these tables when no other compressed tables are being accessed. It involves relatively low overhead on the server, so you might query it periodically on a production server to check the overall efficiency of the compression feature.

The INNODB_CMP_PER_INDEX table reports information about compression activity for individual tables and indexes. This information is more targeted and more useful for evaluating compression efficiency and diagnosing performance issues one table or index at a time. (Because that each InnoDB table is represented as a clustered index, MySQL does not make a big distinction between tables and indexes in this context.) The INNODB_CMP_PER_INDEX table does involve substantial overhead, so it is more suitable for development servers, where you can compare the effects of different workloads, data, and compression settings in isolation. To guard against imposing this monitoring overhead by accident, you must enable the innodb_cmp_per_index_enabled configuration option before you can query the INNODB_CMP_PER_INDEX table.

The key statistics to consider are the number of, and amount of time spent performing, compression and uncompression operations. Since MySQL splits B-tree nodes when they are too full to contain the compressed data following a modification, compare the number of successful compression operations with the number of such operations overall. Based on the information in the INNODB_CMP and INNODB_CMP_PER_INDEX tables and overall application performance and hardware resource utilization, you might make changes in your hardware configuration, adjust the size of the buffer pool, choose a different page size, or select a different set of tables to compress.

If the amount of CPU time required for compressing and uncompressing is high, changing to faster or multi-core CPUs can help improve performance with the same data, application workload and set of compressed tables. Increasing the size of the buffer pool might also help performance, so that more uncompressed pages can stay in memory, reducing the need to uncompress pages that exist in memory only in compressed form.

A large number of compression operations overall (compared to the number of INSERT, UPDATE and DELETE operations in your application and the size of the database) could indicate that some of your compressed tables are being updated too heavily for effective compression. If so, choose a larger page size, or be more selective about which tables you compress.

If the number of successful compression operations (COMPRESS_OPS_OK) is a high percentage of the total number of compression operations (COMPRESS_OPS), then the system is likely performing well. If the ratio is low, then MySQL is reorganizing, recompressing, and splitting B-tree nodes more often than is desirable. In this case, avoid compressing some tables, or increase KEY_BLOCK_SIZE for some of the compressed tables. You might turn off compression for tables that cause the number of compression failures in your application to be more than 1% or 2% of the total. (Such a failure ratio might be acceptable during a temporary operation such as a data load).

14.9.1.5 How Compression Works for InnoDB Tables

This section describes some internal implementation details about compression for InnoDB tables. The information presented here may be helpful in tuning for performance, but is not necessary to know for basic use of compression.

Compression Algorithms

Some operating systems implement compression at the file system level. Files are typically divided into fixed-size blocks that are compressed into variable-size blocks, which easily leads into fragmentation. Every time something inside a block is modified, the whole block is recompressed before it is written to disk. These properties make this compression technique unsuitable for use in an update-intensive database system.

MySQL implements compression with the help of the well-known zlib library, which implements the LZ77 compression algorithm. This compression algorithm is mature, robust, and efficient in both CPU utilization and in reduction of data size. The algorithm is lossless, so that the original uncompressed data can always be reconstructed from the compressed form. LZ77 compression works by finding sequences of data that are repeated within the data to be compressed. The patterns of values in your data determine how well it compresses, but typical user data often compresses by 50% or more.

Note

Prior to MySQL 5.7.24, InnoDB supports the zlib library up to version 1.2.3. In MySQL 5.7.24 and later, InnoDB supports the zlib library up to version 1.2.11.

Unlike compression performed by an application, or compression features of some other database management systems, InnoDB compression applies both to user data and to indexes. In many cases, indexes can constitute 40-50% or more of the total database size, so this difference is significant. When compression is working well for a data set, the size of the InnoDB data files (the file-per-table tablespace or general tablespace .ibd files) is 25% to 50% of the uncompressed size or possibly smaller. Depending on the workload, this smaller database can in turn lead to a reduction in I/O, and an increase in throughput, at a modest cost in terms of increased CPU utilization. You can adjust the balance between compression level and CPU overhead by modifying the innodb_compression_level configuration option.

InnoDB Data Storage and Compression

All user data in InnoDB tables is stored in pages comprising a B-tree index (the clustered index). In some other database systems, this type of index is called an index-organized table. Each row in the index node contains the values of the (user-specified or system-generated) primary key and all the other columns of the table.

Secondary indexes in InnoDB tables are also B-trees, containing pairs of values: the index key and a pointer to a row in the clustered index. The pointer is in fact the value of the primary key of the table, which is used to access the clustered index if columns other than the index key and primary key are required. Secondary index records must always fit on a single B-tree page.

The compression of B-tree nodes (of both clustered and secondary indexes) is handled differently from compression of overflow pages used to store long VARCHAR, BLOB, or TEXT columns, as explained in the following sections.

Compression of B-Tree Pages

Because they are frequently updated, B-tree pages require special treatment. It is important to minimize the number of times B-tree nodes are split, as well as to minimize the need to uncompress and recompress their content.

One technique MySQL uses is to maintain some system information in the B-tree node in uncompressed form, thus facilitating certain in-place updates. For example, this allows rows to be delete-marked and deleted without any compression operation.

In addition, MySQL attempts to avoid unnecessary uncompression and recompression of index pages when they are changed. Within each B-tree page, the system keeps an uncompressed modification log to record changes made to the page. Updates and inserts of small records may be written to this modification log without requiring the entire page to be completely reconstructed.

When the space for the modification log runs out, InnoDB uncompresses the page, applies the changes and recompresses the page. If recompression fails (a situation known as a compression failure), the B-tree nodes are split and the process is repeated until the update or insert succeeds.

To avoid frequent compression failures in write-intensive workloads, such as for OLTP applications, MySQL sometimes reserves some empty space (padding) in the page, so that the modification log fills up sooner and the page is recompressed while there is still enough room to avoid splitting it. The amount of padding space left in each page varies as the system keeps track of the frequency of page splits. On a busy server doing frequent writes to compressed tables, you can adjust the innodb_compression_failure_threshold_pct, and innodb_compression_pad_pct_max configuration options to fine-tune this mechanism.

Generally, MySQL requires that each B-tree page in an InnoDB table can accommodate at least two records. For compressed tables, this requirement has been relaxed. Leaf pages of B-tree nodes (whether of the primary key or secondary indexes) only need to accommodate one record, but that record must fit, in uncompressed form, in the per-page modification log. If innodb_strict_mode is ON, MySQL checks the maximum row size during CREATE TABLE or CREATE INDEX. If the row does not fit, the following error message is issued: ERROR HY000: Too big row.

If you create a table when innodb_strict_mode is OFF, and a subsequent INSERT or UPDATE statement attempts to create an index entry that does not fit in the size of the compressed page, the operation fails with ERROR 42000: Row size too large. (This error message does not name the index for which the record is too large, or mention the length of the index record or the maximum record size on that particular index page.) To solve this problem, rebuild the table with ALTER TABLE and select a larger compressed page size (KEY_BLOCK_SIZE), shorten any column prefix indexes, or disable compression entirely with ROW_FORMAT=DYNAMIC or ROW_FORMAT=COMPACT.

innodb_strict_mode is not applicable to general tablespaces, which also support compressed tables. Tablespace management rules for general tablespaces are strictly enforced independently of innodb_strict_mode. For more information, see Section 13.1.19, “CREATE TABLESPACE Statement”.

Compressing BLOB, VARCHAR, and TEXT Columns

In an InnoDB table, BLOB, VARCHAR, and TEXT columns that are not part of the primary key may be stored on separately allocated overflow pages. We refer to these columns as off-page columns. Their values are stored on singly-linked lists of overflow pages.

For tables created in ROW_FORMAT=DYNAMIC or ROW_FORMAT=COMPRESSED, the values of BLOB, TEXT, or VARCHAR columns may be stored fully off-page, depending on their length and the length of the entire row. For columns that are stored off-page, the clustered index record only contains 20-byte pointers to the overflow pages, one per column. Whether any columns are stored off-page depends on the page size and the total size of the row. When the row is too long to fit entirely within the page of the clustered index, MySQL chooses the longest columns for off-page storage until the row fits on the clustered index page. As noted above, if a row does not fit by itself on a compressed page, an error occurs.

Note

For tables created in ROW_FORMAT=DYNAMIC or ROW_FORMAT=COMPRESSED, TEXT and BLOB columns that are less than or equal to 40 bytes are always stored in-line.

Tables created in older versions of MySQL use the Antelope file format, which supports only ROW_FORMAT=REDUNDANT and ROW_FORMAT=COMPACT. In these formats, MySQL stores the first 768 bytes of BLOB, VARCHAR, and TEXT columns in the clustered index record along with the primary key. The 768-byte prefix is followed by a 20-byte pointer to the overflow pages that contain the rest of the column value.

When a table is in COMPRESSED format, all data written to overflow pages is compressed as is; that is, MySQL applies the zlib compression algorithm to the entire data item. Other than the data, compressed overflow pages contain an uncompressed header and trailer comprising a page checksum and a link to the next overflow page, among other things. Therefore, very significant storage savings can be obtained for longer BLOB, TEXT, or VARCHAR columns if the data is highly compressible, as is often the case with text data. Image data, such as JPEG, is typically already compressed and so does not benefit much from being stored in a compressed table; the double compression can waste CPU cycles for little or no space savings.

The overflow pages are of the same size as other pages. A row containing ten columns stored off-page occupies ten overflow pages, even if the total length of the columns is only 8K bytes. In an uncompressed table, ten uncompressed overflow pages occupy 160K bytes. In a compressed table with an 8K page size, they occupy only 80K bytes. Thus, it is often more efficient to use compressed table format for tables with long column values.

For file-per-table tablespaces, using a 16K compressed page size can reduce storage and I/O costs for BLOB, VARCHAR, or TEXT columns, because such data often compress well, and might therefore require fewer overflow pages, even though the B-tree nodes themselves take as many pages as in the uncompressed form. General tablespaces do not support a 16K compressed page size (KEY_BLOCK_SIZE). For more information, see Section 14.6.3.3, “General Tablespaces”.

Compression and the InnoDB Buffer Pool

In a compressed InnoDB table, every compressed page (whether 1K, 2K, 4K or 8K) corresponds to an uncompressed page of 16K bytes (or a smaller size if innodb_page_size is set). To access the data in a page, MySQL reads the compressed page from disk if it is not already in the buffer pool, then uncompresses the page to its original form. This section describes how InnoDB manages the buffer pool with respect to pages of compressed tables.

To minimize I/O and to reduce the need to uncompress a page, at times the buffer pool contains both the compressed and uncompressed form of a database page. To make room for other required database pages, MySQL can evict from the buffer pool an uncompressed page, while leaving the compressed page in memory. Or, if a page has not been accessed in a while, the compressed form of the page might be written to disk, to free space for other data. Thus, at any given time, the buffer pool might contain both the compressed and uncompressed forms of the page, or only the compressed form of the page, or neither.

MySQL keeps track of which pages to keep in memory and which to evict using a least-recently-used (LRU) list, so that hot (frequently accessed) data tends to stay in memory. When compressed tables are accessed, MySQL uses an adaptive LRU algorithm to achieve an appropriate balance of compressed and uncompressed pages in memory. This adaptive algorithm is sensitive to whether the system is running in an I/O-bound or CPU-bound manner. The goal is to avoid spending too much processing time uncompressing pages when the CPU is busy, and to avoid doing excess I/O when the CPU has spare cycles that can be used for uncompressing compressed pages (that may already be in memory). When the system is I/O-bound, the algorithm prefers to evict the uncompressed copy of a page rather than both copies, to make more room for other disk pages to become memory resident. When the system is CPU-bound, MySQL prefers to evict both the compressed and uncompressed page, so that more memory can be used for hot pages and reducing the need to uncompress data in memory only in compressed form.

Compression and the InnoDB Redo Log Files

Before a compressed page is written to a data file, MySQL writes a copy of the page to the redo log (if it has been recompressed since the last time it was written to the database). This is done to ensure that redo logs are usable for crash recovery, even in the unlikely case that the zlib library is upgraded and that change introduces a compatibility problem with the compressed data. Therefore, some increase in the size of log files, or a need for more frequent checkpoints, can be expected when using compression. The amount of increase in the log file size or checkpoint frequency depends on the number of times compressed pages are modified in a way that requires reorganization and recompression.

Compressed tables require the Barracuda file format. To create a compressed table in a file-per-table tablespace, innodb_file_per_table must be enabled and innodb_file_format must be set to Barracuda. There is no dependence on the innodb_file_format setting when creating a compressed table in a general tablespace. For more information, see Section 14.6.3.3, “General Tablespaces”. The MySQL Enterprise Backup product supports the Barracuda file format.

14.9.1.6 Compression for OLTP Workloads

Traditionally, the InnoDB compression feature was recommended primarily for read-only or read-mostly workloads, such as in a data warehouse configuration. The rise of SSD storage devices, which are fast but relatively small and expensive, makes compression attractive also for OLTP workloads: high-traffic, interactive websites can reduce their storage requirements and their I/O operations per second (IOPS) by using compressed tables with applications that do frequent INSERT, UPDATE, and DELETE operations.

Configuration options introduced in MySQL 5.6 let you adjust the way compression works for a particular MySQL instance, with an emphasis on performance and scalability for write-intensive operations:

  • innodb_compression_level lets you turn the degree of compression up or down. A higher value lets you fit more data onto a storage device, at the expense of more CPU overhead during compression. A lower value lets you reduce CPU overhead when storage space is not critical, or you expect the data is not especially compressible.

  • innodb_compression_failure_threshold_pct specifies a cutoff point for compression failures during updates to a compressed table. When this threshold is passed, MySQL begins to leave additional free space within each new compressed page, dynamically adjusting the amount of free space up to the percentage of page size specified by innodb_compression_pad_pct_max

  • innodb_compression_pad_pct_max lets you adjust the maximum amount of space reserved within each page to record changes to compressed rows, without needing to compress the entire page again. The higher the value, the more changes can be recorded without recompressing the page. MySQL uses a variable amount of free space for the pages within each compressed table, only when a designated percentage of compression operations fail at runtime, requiring an expensive operation to split the compressed page.

  • innodb_log_compressed_pages lets you disable writing of images of re-compressed pages to the redo log. Re-compression may occur when changes are made to compressed data. This option is enabled by default to prevent corruption that could occur if a different version of the zlib compression algorithm is used during recovery. If you are certain that the zlib version will not change, disable innodb_log_compressed_pages to reduce redo log generation for workloads that modify compressed data.

Because working with compressed data sometimes involves keeping both compressed and uncompressed versions of a page in memory at the same time, when using compression with an OLTP-style workload, be prepared to increase the value of the innodb_buffer_pool_size configuration option.

14.9.1.7 SQL Compression Syntax Warnings and Errors

This section describes syntax warnings and errors that you may encounter when using the table compression feature with file-per-table tablespaces and general tablespaces.

SQL Compression Syntax Warnings and Errors for File-Per-Table Tablespaces

When innodb_strict_mode is enabled (the default), specifying ROW_FORMAT=COMPRESSED or KEY_BLOCK_SIZE in CREATE TABLE or ALTER TABLE statements produces the following error if innodb_file_per_table is disabled or if innodb_file_format is set to Antelope rather than Barracuda.

ERROR 1031 (HY000): Table storage engine for 't1' doesn't have this option
Note

The table is not created if the current configuration does not permit using compressed tables.

When innodb_strict_mode is disabled, specifying ROW_FORMAT=COMPRESSED or KEY_BLOCK_SIZE in CREATE TABLE or ALTER TABLE statements produces the following warnings if innodb_file_per_table is disabled.

mysql> SHOW WARNINGS;
+---------+------+---------------------------------------------------------------+
| Level   | Code | Message                                                       |
+---------+------+---------------------------------------------------------------+
| Warning | 1478 | InnoDB: KEY_BLOCK_SIZE requires innodb_file_per_table.        |
| Warning | 1478 | InnoDB: ignoring KEY_BLOCK_SIZE=4.                            |
| Warning | 1478 | InnoDB: ROW_FORMAT=COMPRESSED requires innodb_file_per_table. |
| Warning | 1478 | InnoDB: assuming ROW_FORMAT=DYNAMIC.                          |
+---------+------+---------------------------------------------------------------+

Similar warnings are issued if innodb_file_format is set to Antelope rather than Barracuda.

Note

These messages are only warnings, not errors, and the table is created without compression, as if the options were not specified.

The non-strict behavior lets you import a mysqldump file into a database that does not support compressed tables, even if the source database contained compressed tables. In that case, MySQL creates the table in ROW_FORMAT=COMPACT instead of preventing the operation.

To import the dump file into a new database, and have the tables re-created as they exist in the original database, ensure the server has the proper settings for the configuration parameters innodb_file_format and innodb_file_per_table.

The attribute KEY_BLOCK_SIZE is permitted only when ROW_FORMAT is specified as COMPRESSED or is omitted. Specifying a KEY_BLOCK_SIZE with any other ROW_FORMAT generates a warning that you can view with SHOW WARNINGS. However, the table is non-compressed; the specified KEY_BLOCK_SIZE is ignored).

Level Code Message
Warning 1478 InnoDB: ignoring KEY_BLOCK_SIZE=n unless ROW_FORMAT=COMPRESSED.

If you are running with innodb_strict_mode enabled, the combination of a KEY_BLOCK_SIZE with any ROW_FORMAT other than COMPRESSED generates an error, not a warning, and the table is not created.

Table 14.6, “ROW_FORMAT and KEY_BLOCK_SIZE Options” provides an overview the ROW_FORMAT and KEY_BLOCK_SIZE options that are used with CREATE TABLE or ALTER TABLE.

Table 14.6 ROW_FORMAT and KEY_BLOCK_SIZE Options

Option Usage Notes Description
ROW_FORMAT=​REDUNDANT Storage format used prior to MySQL 5.0.3 Less efficient than ROW_FORMAT=COMPACT; for backward compatibility
ROW_FORMAT=​COMPACT Default storage format since MySQL 5.0.3 Stores a prefix of 768 bytes of long column values in the clustered index page, with the remaining bytes stored in an overflow page
ROW_FORMAT=​DYNAMIC File-per-table tablespaces require innodb_file​_format=Barracuda Store values within the clustered index page if they fit; if not, stores only a 20-byte pointer to an overflow page (no prefix)
ROW_FORMAT=​COMPRESSED File-per-table tablespaces require innodb_file​_format=Barracuda Compresses the table and indexes using zlib
KEY_BLOCK_​SIZE=n File-per-table tablespaces require innodb_file​_format=Barracuda Specifies compressed page size of 1, 2, 4, 8 or 16 kilobytes; implies ROW_FORMAT=COMPRESSED. For general tablespaces, a KEY_BLOCK_SIZE value equal to the InnoDB page size is not permitted.

Table 14.7, “CREATE/ALTER TABLE Warnings and Errors when InnoDB Strict Mode is OFF” summarizes error conditions that occur with certain combinations of configuration parameters and options on the CREATE TABLE or ALTER TABLE statements, and how the options appear in the output of SHOW TABLE STATUS.

When innodb_strict_mode is OFF, MySQL creates or alters the table, but ignores certain settings as shown below. You can see the warning messages in the MySQL error log. When innodb_strict_mode is ON, these specified combinations of options generate errors, and the table is not created or altered. To see the full description of the error condition, issue the SHOW ERRORS statement: example:

mysql> CREATE TABLE x (id INT PRIMARY KEY, c INT)

-> ENGINE=INNODB KEY_BLOCK_SIZE=33333;

ERROR 1005 (HY000): Can't create table 'test.x' (errno: 1478)

mysql> SHOW ERRORS;
+-------+------+-------------------------------------------+
| Level | Code | Message                                   |
+-------+------+-------------------------------------------+
| Error | 1478 | InnoDB: invalid KEY_BLOCK_SIZE=33333.     |
| Error | 1005 | Can't create table 'test.x' (errno: 1478) |
+-------+------+-------------------------------------------+

Table 14.7 CREATE/ALTER TABLE Warnings and Errors when InnoDB Strict Mode is OFF

Syntax Warning or Error Condition Resulting ROW_FORMAT, as shown in SHOW TABLE STATUS
ROW_FORMAT=REDUNDANT None REDUNDANT
ROW_FORMAT=COMPACT None COMPACT
ROW_FORMAT=COMPRESSED or ROW_FORMAT=DYNAMIC or KEY_BLOCK_SIZE is specified Ignored for file-per-table tablespaces unless both innodb_file_format=Barracuda and innodb_file_per_table are enabled. General tablespaces support all row formats (with some restrictions) regardless of innodb_file_format and innodb_file_per_table settings. See Section 14.6.3.3, “General Tablespaces”. the default row format for file-per-table tablespaces; the specified row format for general tablespaces
Invalid KEY_BLOCK_SIZE is specified (not 1, 2, 4, 8 or 16) KEY_BLOCK_SIZE is ignored the specified row format, or the default row format
ROW_FORMAT=COMPRESSED and valid KEY_BLOCK_SIZE are specified None; KEY_BLOCK_SIZE specified is used COMPRESSED
KEY_BLOCK_SIZE is specified with REDUNDANT, COMPACT or DYNAMIC row format KEY_BLOCK_SIZE is ignored REDUNDANT, COMPACT or DYNAMIC
ROW_FORMAT is not one of REDUNDANT, COMPACT, DYNAMIC or COMPRESSED Ignored if recognized by the MySQL parser. Otherwise, an error is issued. the default row format or N/A

When innodb_strict_mode is ON, MySQL rejects invalid ROW_FORMAT or KEY_BLOCK_SIZE parameters and issues errors. When innodb_strict_mode is OFF, MySQL issues warnings instead of errors for ignored invalid parameters. innodb_strict_mode is ON by default.

When innodb_strict_mode is ON, MySQL rejects invalid ROW_FORMAT or KEY_BLOCK_SIZE parameters. For compatibility with earlier versions of MySQL, strict mode is not enabled by default; instead, MySQL issues warnings (not errors) for ignored invalid parameters.

It is not possible to see the chosen KEY_BLOCK_SIZE using SHOW TABLE STATUS. The statement SHOW CREATE TABLE displays the KEY_BLOCK_SIZE (even if it was ignored when creating the table). The real compressed page size of the table cannot be displayed by MySQL.

SQL Compression Syntax Warnings and Errors for General Tablespaces
  • If FILE_BLOCK_SIZE was not defined for the general tablespace when the tablespace was created, the tablespace cannot contain compressed tables. If you attempt to add a compressed table, an error is returned, as shown in the following example:

    mysql> CREATE TABLESPACE `ts1` ADD DATAFILE 'ts1.ibd' Engine=InnoDB;
    
    mysql> CREATE TABLE t1 (c1 INT PRIMARY KEY) TABLESPACE ts1 ROW_FORMAT=COMPRESSED
           KEY_BLOCK_SIZE=8;
    ERROR 1478 (HY000): InnoDB: Tablespace `ts1` cannot contain a COMPRESSED table
    
  • Attempting to add a table with an invalid KEY_BLOCK_SIZE to a general tablespace returns an error, as shown in the following example:

    mysql> CREATE TABLESPACE `ts2` ADD DATAFILE 'ts2.ibd' FILE_BLOCK_SIZE = 8192 Engine=InnoDB;
      
    mysql> CREATE TABLE t2 (c1 INT PRIMARY KEY) TABLESPACE ts2 ROW_FORMAT=COMPRESSED
           KEY_BLOCK_SIZE=4;
    ERROR 1478 (HY000): InnoDB: Tablespace `ts2` uses block size 8192 and cannot
    contain a table with physical page size 4096

    For general tablespaces, the KEY_BLOCK_SIZE of the table must be equal to the FILE_BLOCK_SIZE of the tablespace divided by 1024. For example, if the FILE_BLOCK_SIZE of the tablespace is 8192, the KEY_BLOCK_SIZE of the table must be 8.

  • Attempting to add a table with an uncompressed row format to a general tablespace configured to store compressed tables returns an error, as shown in the following example:

    mysql> CREATE TABLESPACE `ts3` ADD DATAFILE 'ts3.ibd' FILE_BLOCK_SIZE = 8192 Engine=InnoDB;
    
    mysql> CREATE TABLE t3 (c1 INT PRIMARY KEY) TABLESPACE ts3 ROW_FORMAT=COMPACT;
    ERROR 1478 (HY000): InnoDB: Tablespace `ts3` uses block size 8192 and cannot
    contain a table with physical page size 16384

innodb_strict_mode is not applicable to general tablespaces. Tablespace management rules for general tablespaces are strictly enforced independently of innodb_strict_mode. For more information, see Section 13.1.19, “CREATE TABLESPACE Statement”.

For more information about using compressed tables with general tablespaces, see Section 14.6.3.3, “General Tablespaces”.

14.9.2 InnoDB Page Compression

InnoDB supports page-level compression for tables that reside in file-per-table tablespaces. This feature is referred to as Transparent Page Compression. Page compression is enabled by specifying the COMPRESSION attribute with CREATE TABLE or ALTER TABLE. Supported compression algorithms include Zlib and LZ4.

Supported Platforms

Page compression requires sparse file and hole punching support. Page compression is supported on Windows with NTFS, and on the following subset of MySQL-supported Linux platforms where the kernel level provides hole punching support:

  • RHEL 7 and derived distributions that use kernel version 3.10.0-123 or higher

  • OEL 5.10 (UEK2) kernel version 2.6.39 or higher

  • OEL 6.5 (UEK3) kernel version 3.8.13 or higher

  • OEL 7.0 kernel version 3.8.13 or higher

  • SLE11 kernel version 3.0-x

  • SLE12 kernel version 3.12-x

  • OES11 kernel version 3.0-x

  • Ubuntu 14.0.4 LTS kernel version 3.13 or higher

  • Ubuntu 12.0.4 LTS kernel version 3.2 or higher

  • Debian 7 kernel version 3.2 or higher

Note

All of the available file systems for a given Linux distribution may not support hole punching.

How Page Compression Works

When a page is written, it is compressed using the specified compression algorithm. The compressed data is written to disk, where the hole punching mechanism releases empty blocks from the end of the page. If compression fails, data is written out as-is.

Hole Punch Size on Linux

On Linux systems, the file system block size is the unit size used for hole punching. Therefore, page compression only works if page data can be compressed to a size that is less than or equal to the InnoDB page size minus the file system block size. For example, if innodb_page_size=16K and the file system block size is 4K, page data must compress to less than or equal to 12K to make hole punching possible.

Hole Punch Size on Windows

On Windows systems, the underlying infrastructure for sparse files is based on NTFS compression. Hole punching size is the NTFS compression unit, which is 16 times the NTFS cluster size. Cluster sizes and their compression units are shown in the following table:

Table 14.8 Windows NTFS Cluster Size and Compression Units

Cluster Size Compression Unit
512 Bytes 8 KB
1 KB 16 KB
2 KB 32 KB
4 KB 64 KB

Page compression on Windows systems only works if page data can be compressed to a size that is less than or equal to the InnoDB page size minus the compression unit size.

The default NTFS cluster size is 4KB, for which the compression unit size is 64KB. This means that page compression has no benefit for an out-of-the box Windows NTFS configuration, as the maximum innodb_page_size is also 64KB.

For page compression to work on Windows, the file system must be created with a cluster size smaller than 4K, and the innodb_page_size must be at least twice the size of the compression unit. For example, for page compression to work on Windows, you could build the file system with a cluster size of 512 Bytes (which has a compression unit of 8KB) and initialize InnoDB with an innodb_page_size value of 16K or greater.

Enabling Page Compression

To enable page compression, specify the COMPRESSION attribute in the CREATE TABLE statement. For example:

CREATE TABLE t1 (c1 INT) COMPRESSION="zlib";

You can also enable page compression in an ALTER TABLE statement. However, ALTER TABLE ... COMPRESSION only updates the tablespace compression attribute. Writes to the tablespace that occur after setting the new compression algorithm use the new setting, but to apply the new compression algorithm to existing pages, you must rebuild the table using OPTIMIZE TABLE.

ALTER TABLE t1 COMPRESSION="zlib";
OPTIMIZE TABLE t1;

Disabling Page Compression

To disable page compression, set COMPRESSION=None using ALTER TABLE. Writes to the tablespace that occur after setting COMPRESSION=None no longer use page compression. To uncompress existing pages, you must rebuild the table using OPTIMIZE TABLE after setting COMPRESSION=None.

ALTER TABLE t1 COMPRESSION="None";
OPTIMIZE TABLE t1;

Page Compression Metadata

Page compression metadata is found in the INFORMATION_SCHEMA.INNODB_SYS_TABLESPACES table, in the following columns:

  • FS_BLOCK_SIZE: The file system block size, which is the unit size used for hole punching.

  • FILE_SIZE: The apparent size of the file, which represents the maximum size of the file, uncompressed.

  • ALLOCATED_SIZE: The actual size of the file, which is the amount of space allocated on disk.

Note

On Unix-like systems, ls -l tablespace_name.ibd shows the apparent file size (equivalent to FILE_SIZE) in bytes. To view the actual amount of space allocated on disk (equivalent to ALLOCATED_SIZE), use du --block-size=1 tablespace_name.ibd. The --block-size=1 option prints the allocated space in bytes instead of blocks, so that it can be compared to ls -l output.

Use SHOW CREATE TABLE to view the current page compression setting (Zlib, Lz4, or None). A table may contain a mix of pages with different compression settings.

In the following example, page compression metadata for the employees table is retrieved from the INFORMATION_SCHEMA.INNODB_SYS_TABLESPACES table.

# Create the employees table with Zlib page compression

CREATE TABLE employees (
    emp_no      INT             NOT NULL,
    birth_date  DATE            NOT NULL,
    first_name  VARCHAR(14)     NOT NULL,
    last_name   VARCHAR(16)     NOT NULL,
    gender      ENUM ('M','F')  NOT NULL,  
    hire_date   DATE            NOT NULL,
    PRIMARY KEY (emp_no)
) COMPRESSION="zlib";

# Insert data (not shown)
  
# Query page compression metadata in INFORMATION_SCHEMA.INNODB_SYS_TABLESPACES
  
mysql> SELECT SPACE, NAME, FS_BLOCK_SIZE, FILE_SIZE, ALLOCATED_SIZE FROM
       INFORMATION_SCHEMA.INNODB_SYS_TABLESPACES WHERE NAME='employees/employees'\G
*************************** 1. row ***************************
SPACE: 45
NAME: employees/employees
FS_BLOCK_SIZE: 4096
FILE_SIZE: 23068672
ALLOCATED_SIZE: 19415040

Page compression metadata for the employees table shows that the apparent file size is 23068672 bytes while the actual file size (with page compression) is 19415040 bytes. The file system block size is 4096 bytes, which is the block size used for hole punching.

Identifying Tables Using Page Compression

To identify tables for which page compression is enabled, you can query the INFORMATION_SCHEMA.TABLES CREATE_OPTIONS column for tables defined with the COMPRESSION attribute:

mysql> SELECT TABLE_NAME, TABLE_SCHEMA, CREATE_OPTIONS FROM INFORMATION_SCHEMA.TABLES 
       WHERE CREATE_OPTIONS LIKE '%COMPRESSION=%';
+------------+--------------+--------------------+
| TABLE_NAME | TABLE_SCHEMA | CREATE_OPTIONS     |
+------------+--------------+--------------------+
| employees  | test         | COMPRESSION="zlib" |
+------------+--------------+--------------------+ 

SHOW CREATE TABLE also shows the COMPRESSION attribute, if used.

Page Compression Limitations and Usage Notes

  • Page compression is disabled if the file system block size (or compression unit size on Windows) * 2 > innodb_page_size.

  • Page compression is not supported for tables that reside in shared tablespaces, which include the system tablespace, the temporary tablespace, and general tablespaces.

  • Page compression is not supported for undo log tablespaces.

  • Page compression is not supported for redo log pages.

  • R-tree pages, which are used for spatial indexes, are not compressed.

  • Pages that belong to compressed tables (ROW_FORMAT=COMPRESSED) are left as-is.

  • During recovery, updated pages are written out in an uncompressed form.

  • Loading a page-compressed tablespace on a server that does not support the compression algorithm that was used causes an I/O error.

  • Before downgrading to an earlier version of MySQL that does not support page compression, uncompress the tables that use the page compression feature. To uncompress a table, run ALTER TABLE ... COMPRESSION=None and OPTIMIZE TABLE.

  • Page-compressed tablespaces can be copied between Linux and Windows servers if the compression algorithm that was used is available on both servers.

  • Preserving page compression when moving a page-compressed tablespace file from one host to another requires a utility that preserves sparse files.

  • Better page compression may be achieved on Fusion-io hardware with NVMFS than on other platforms, as NVMFS is designed to take advantage of punch hole functionality.

  • Using the page compression feature with a large InnoDB page size and relatively small file system block size could result in write amplification. For example, a maximum InnoDB page size of 64KB with a 4KB file system block size may improve compression but may also increase demand on the buffer pool, leading to increased I/O and potential write amplification.

14.10 InnoDB File-Format Management

As InnoDB evolves, data file formats that are not compatible with prior versions of InnoDB are sometimes required to support new features. To help manage compatibility in upgrade and downgrade situations, and systems that run different versions of MySQL, InnoDB uses named file formats. InnoDB currently supports two named file formats, Antelope and Barracuda.

This section discusses enabling InnoDB file formats for new InnoDB tables, verifying compatibility of different file formats between MySQL releases, and identifying the file format in use.

InnoDB file format settings do not apply to tables stored in general tablespaces. General tablespaces provide support for all row formats and associated features. For more information, see Section 14.6.3.3, “General Tablespaces”.

Note

The following file format configuration parameters have new default values:

  • The innodb_file_format default value was changed to Barracuda. The previous default value was Antelope.

  • The innodb_large_prefix default value was changed to ON. The previous default was OFF.

The following file format configuration parameters are deprecated in and may be removed in a future release:

The file format configuration parameters were provided for creating tables compatible with earlier versions of InnoDB in MySQL 5.1. Now that MySQL 5.1 has reached the end of its product lifecycle, the parameters are no longer required.

14.10.1 Enabling File Formats

The innodb_file_format configuration option enables an InnoDB file format for file-per-table tablespaces.

Barracuda is the default innodb_file_format setting. In earlier releases, the default file format was Antelope.

Note

The innodb_file_format configuration option is deprecated and may be removed in a future release. For more information, see Section 14.10, “InnoDB File-Format Management”.

You can set the value of innodb_file_format on the command line when you start mysqld, or in the option file (my.cnf on Unix, my.ini on Windows). You can also change it dynamically with a SET GLOBAL statement.

SET GLOBAL innodb_file_format=Barracuda;

Usage notes

14.10.2 Verifying File Format Compatibility

InnoDB incorporates several checks to guard against the possible crashes and data corruptions that might occur if you run an old release of the MySQL server on InnoDB data files that use a newer file format. These checks take place when the server is started, and when you first access a table. This section describes these checks, how you can control them, and error and warning conditions that might arise.

Backward Compatibility

You only need to consider backward file format compatibility when using a recent version of InnoDB (MySQL 5.5 and higher with InnoDB) alongside an older version (MySQL 5.1 or earlier, with the built-in InnoDB rather than the InnoDB Plugin). To minimize the chance of compatibility issues, you can standardize on the InnoDB Plugin for all your MySQL 5.1 and earlier database servers.

In general, a newer version of InnoDB may create a table or index that cannot safely be read or written with an older version of InnoDB without risk of crashes, hangs, wrong results or corruptions. InnoDB includes a mechanism to guard against these conditions, and to help preserve compatibility among database files and versions of InnoDB. This mechanism lets you take advantage of some new features of an InnoDB release (such as performance improvements and bug fixes), and still preserve the option of using your database with an old version of InnoDB, by preventing accidental use of new features that create downward-incompatible disk files.

If a version of InnoDB supports a particular file format (whether or not that format is the default), you can query and update any table that requires that format or an earlier format. Only the creation of new tables using new features is limited based on the particular file format enabled. Conversely, if a tablespace contains a table or index that uses a file format that is not supported, it cannot be accessed at all, even for read access.

The only way to downgrade an InnoDB tablespace to the earlier Antelope file format is to copy the data to a new table, in a tablespace that uses the earlier format.

The easiest way to determine the file format of an existing InnoDB tablespace is to examine the properties of the table it contains, using the SHOW TABLE STATUS command or querying the table INFORMATION_SCHEMA.TABLES. If the Row_format of the table is reported as 'Compressed' or 'Dynamic', the tablespace containing the table supports the Barracuda format.

Internal Details

Every InnoDB file-per-table tablespace (represented by a *.ibd file) file is labeled with a file format identifier. The system tablespace (represented by the ibdata files) is tagged with the highest file format in use in a group of InnoDB database files, and this tag is checked when the files are opened.

Creating a compressed table, or a table with ROW_FORMAT=DYNAMIC, updates the file header of the corresponding file-per-table .ibd file and the table type in the InnoDB data dictionary with the identifier for the Barracuda file format. From that point forward, the table cannot be used with a version of InnoDB that does not support the Barracuda file format. To protect against anomalous behavior, InnoDB performs a compatibility check when the table is opened. (In many cases, the ALTER TABLE statement recreates a table and thus changes its properties. The special case of adding or dropping indexes without rebuilding the table is described in Section 14.13.1, “Online DDL Operations”.)

General tablespaces, which are also represented by a *.ibd file, support both Antelope and Barracuda file formats. For more information about general tablespaces, see Section 14.6.3.3, “General Tablespaces”.

Definition of ib-file set

To avoid confusion, for the purposes of this discussion we define the term ib-file set to mean the set of operating system files that InnoDB manages as a unit. The ib-file set includes the following files:

  • The system tablespace (one or more ibdata files) that contain internal system information (including internal catalogs and undo information) and may include user data and indexes.

  • Zero or more single-table tablespaces (also called file per table files, named *.ibd files).

  • InnoDB log files; usually two, ib_logfile0 and ib_logfile1. Used for crash recovery and in backups.

An ib-file set does not include the corresponding .frm files that contain metadata about InnoDB tables. The .frm files are created and managed by MySQL, and can sometimes get out of sync with the internal metadata in InnoDB.

Multiple tables, even from more than one database, can be stored in a single ib-file set. (In MySQL, a database is a logical collection of tables, what other systems refer to as a schema or catalog.)

14.10.2.1 Compatibility Check When InnoDB Is Started

To prevent possible crashes or data corruptions when InnoDB opens an ib-file set, it checks that it can fully support the file formats in use within the ib-file set. If the system is restarted following a crash, or a fast shutdown (i.e., innodb_fast_shutdown is greater than zero), there may be on-disk data structures (such as redo or undo entries, or doublewrite pages) that are in a too-new format for the current software. During the recovery process, serious damage can be done to your data files if these data structures are accessed. The startup check of the file format occurs before any recovery process begins, thereby preventing consistency issues with the new tables or startup problems for the MySQL server.

Beginning with version InnoDB 1.0.1, the system tablespace records an identifier or tag for the highest file format used by any table in any of the tablespaces that is part of the ib-file set. Checks against this file format tag are controlled by the configuration parameter innodb_file_format_check, which is ON by default.

If the file format tag in the system tablespace is newer or higher than the highest version supported by the particular currently executing software and if innodb_file_format_check is ON, the following error is issued when the server is started:

InnoDB: Error: the system tablespace is in a
file format that this version doesn't support

You can also set innodb_file_format to a file format name. Doing so prevents InnoDB from starting if the current software does not support the file format specified. It also sets the high water mark to the value you specify. The ability to set innodb_file_format_check is useful (with future releases) if you manually downgrade all of the tables in an ib-file set. You can then rely on the file format check at startup if you subsequently use an older version of InnoDB to access the ib-file set.

In some limited circumstances, you might want to start the server and use an ib-file set that is in a new file format that is not supported by the software you are using. If you set the configuration parameter innodb_file_format_check to OFF, InnoDB opens the database, but issues this warning message in the error log:

InnoDB: Warning: the system tablespace is in a
file format that this version doesn't support
Note

This is a dangerous setting, as it permits the recovery process to run, possibly corrupting your database if the previous shutdown was a crash or fast shutdown. You should only set innodb_file_format_check to OFF if you are sure that the previous shutdown was done with innodb_fast_shutdown=0, so that essentially no recovery process occurs.

The parameter innodb_file_format_check affects only what happens when a database is opened, not subsequently. Conversely, the parameter innodb_file_format (which enables a specific format) only determines whether or not a new table can be created in the enabled format and has no effect on whether or not a database can be opened.

The file format tag is a high water mark, and as such it is increased after the server is started, if a table in a higher format is created or an existing table is accessed for read or write (assuming its format is supported). If you access an existing table in a format higher than the format the running software supports, the system tablespace tag is not updated, but table-level compatibility checking applies (and an error is issued), as described in Section 14.10.2.2, “Compatibility Check When a Table Is Opened”. Any time the high water mark is updated, the value of innodb_file_format_check is updated as well, so the command SELECT @@innodb_file_format_check; displays the name of the latest file format known to be used by tables in the currently open ib-file set and supported by the currently executing software.

14.10.2.2 Compatibility Check When a Table Is Opened

When a table is first accessed, InnoDB (including some releases prior to InnoDB 1.0) checks that the file format of the tablespace in which the table is stored is fully supported. This check prevents crashes or corruptions that would otherwise occur when tables using a too new data structure are encountered.

All tables using any file format supported by a release can be read or written (assuming the user has sufficient privileges). The setting of the system configuration parameter innodb_file_format can prevent creating a new table that uses a specific file format, even if the file format is supported by a given release. Such a setting might be used to preserve backward compatibility, but it does not prevent accessing any table that uses a supported format.

Versions of MySQL older than 5.0.21 cannot reliably use database files created by newer versions if a new file format was used when a table was created. To prevent various error conditions or corruptions, InnoDB checks file format compatibility when it opens a file (for example, upon first access to a table). If the currently running version of InnoDB does not support the file format identified by the table type in the InnoDB data dictionary, MySQL reports the following error:

ERROR 1146 (42S02): Table 'test.t1' doesn't exist

InnoDB also writes a message to the error log:

InnoDB: table test/t1: unknown table type 33

The table type should be equal to the tablespace flags, which contains the file format version as discussed in Section 14.10.3, “Identifying the File Format in Use”.

Versions of InnoDB prior to MySQL 4.1 did not include table format identifiers in the database files, and versions prior to MySQL 5.0.21 did not include a table format compatibility check. Therefore, there is no way to ensure proper operations if a table in a newer file format is used with versions of InnoDB prior to 5.0.21.

The file format management capability in InnoDB 1.0 and higher (tablespace tagging and run-time checks) allows InnoDB to verify as soon as possible that the running version of software can properly process the tables existing in the database.

If you permit InnoDB to open a database containing files in a format it does not support (by setting the parameter innodb_file_format_check to OFF), the table-level checking described in this section still applies.

Users are strongly urged not to use database files that contain Barracuda file format tables with releases of InnoDB older than the MySQL 5.1 with the InnoDB Plugin. It may be possible to rebuild such tables to use the Antelope format.

14.10.3 Identifying the File Format in Use

If you enable a different file format using the innodb_file_format configuration option, the change only applies to newly created tables. Also, when you create a new table, the tablespace containing the table is tagged with the earliest or simplest file format that is required to support the table's features. For example, if you enable the Barracuda file format, and create a new table that does not use the Dynamic or Compressed row format, the new tablespace that contains the table is tagged as using the Antelope file format .

It is easy to identify the file format used by a given table. The table uses the Antelope file format if the row format reported by SHOW TABLE STATUS is either Compact or Redundant. The table uses the Barracuda file format if the row format reported by SHOW TABLE STATUS is either Compressed or Dynamic.

mysql> SHOW TABLE STATUS\G
*************************** 1. row ***************************
           Name: t1
         Engine: InnoDB
        Version: 10
     Row_format: Compact
           Rows: 0
 Avg_row_length: 0
    Data_length: 16384
Max_data_length: 0
   Index_length: 16384
      Data_free: 0
 Auto_increment: 1
    Create_time: 2014-11-03 13:32:10
    Update_time: NULL
     Check_time: NULL
      Collation: latin1_swedish_ci
       Checksum: NULL
 Create_options:
        Comment:

You can also identify the file format used by a given table or tablespace using InnoDB INFORMATION_SCHEMA tables. For example:

mysql> SELECT * FROM INFORMATION_SCHEMA.INNODB_SYS_TABLES WHERE NAME='test/t1'\G
*************************** 1. row ***************************
     TABLE_ID: 44
         NAME: test/t1
         FLAG: 1
       N_COLS: 6
        SPACE: 30
  FILE_FORMAT: Antelope
   ROW_FORMAT: Compact
ZIP_PAGE_SIZE: 0
  
mysql> SELECT * FROM INFORMATION_SCHEMA.INNODB_SYS_TABLESPACES WHERE NAME='test/t1'\G
*************************** 1. row ***************************
        SPACE: 30
         NAME: test/t1
         FLAG: 0
  FILE_FORMAT: Antelope
   ROW_FORMAT: Compact or Redundant
    PAGE_SIZE: 16384
ZIP_PAGE_SIZE: 0

14.10.4 Modifying the File Format

Each InnoDB tablespace file (with a name matching *.ibd) is tagged with the file format used to create its table and indexes. The way to modify the file format is to re-create the table and its indexes. The easiest way to recreate a table and its indexes is to use the following command on each table that you want to modify:

ALTER TABLE t ROW_FORMAT=format_name;

If you are modifying the file format to downgrade to an older MySQL version, there may be incompatibilities in table storage formats that require additional steps. For information about downgrading to a previous MySQL version, see Section 2.12, “Downgrading MySQL”.

14.11 InnoDB Row Formats

The row format of a table determines how its rows are physically stored, which in turn can affect the performance of queries and DML operations. As more rows fit into a single disk page, queries and index lookups can work faster, less cache memory is required in the buffer pool, and less I/O is required to write out updated values.

The data in each table is divided into pages. The pages that make up each table are arranged in a tree data structure called a B-tree index. Table data and secondary indexes both use this type of structure. The B-tree index that represents an entire table is known as the clustered index, which is organized according to the primary key columns. The nodes of a clustered index data structure contain the values of all columns in the row. The nodes of a secondary index structure contain the values of index columns and primary key columns.

Variable-length columns are an exception to the rule that column values are stored in B-tree index nodes. Variable-length columns that are too long to fit on a B-tree page are stored on separately allocated disk pages called overflow pages. Such columns are referred to as off-page columns. The values of off-page columns are stored in singly-linked lists of overflow pages, with each such column having its own list of one or more overflow pages. Depending on column length, all or a prefix of variable-length column values are stored in the B-tree to avoid wasting storage and having to read a separate page.

The InnoDB storage engine supports four row formats: REDUNDANT, COMPACT, DYNAMIC, and COMPRESSED.

Table 14.9 InnoDB Row Format Overview

Row Format Compact Storage Characteristics Enhanced Variable-Length Column Storage Large Index Key Prefix Support Compression Support Supported Tablespace Types Required File Format
REDUNDANT No No No No system, file-per-table, general Antelope or Barracuda
COMPACT Yes No No No system, file-per-table, general Antelope or Barracuda
DYNAMIC Yes Yes Yes No system, file-per-table, general Barracuda
COMPRESSED Yes Yes Yes Yes file-per-table, general Barracuda

The topics that follow describe row format storage characteristics and how to define and determine the row format of a table.

REDUNDANT Row Format

The REDUNDANT format provides compatibility with older versions of MySQL.

The REDUNDANT row format is supported by both InnoDB file formats (Antelope and Barracuda). For more information, see Section 14.10, “InnoDB File-Format Management”.

Tables that use the REDUNDANT row format store the first 768 bytes of variable-length column values (VARCHAR, VARBINARY, and BLOB and TEXT types) in the index record within the B-tree node, with the remainder stored on overflow pages. Fixed-length columns greater than or equal to 768 bytes are encoded as variable-length columns, which can be stored off-page. For example, a CHAR(255) column can exceed 768 bytes if the maximum byte length of the character set is greater than 3, as it is with utf8mb4.

If the value of a column is 768 bytes or less, an overflow page is not used, and some savings in I/O may result, since the value is stored entirely in the B-tree node. This works well for relatively short BLOB column values, but may cause B-tree nodes to fill with data rather than key values, reducing their efficiency. Tables with many BLOB columns could cause B-tree nodes to become too full, and contain too few rows, making the entire index less efficient than if rows were shorter or column values were stored off-page.

REDUNDANT Row Format Storage Characteristics

The REDUNDANT row format has the following storage characteristics:

  • Each index record contains a 6-byte header. The header is used to link together consecutive records, and for row-level locking.

  • Records in the clustered index contain fields for all user-defined columns. In addition, there is a 6-byte transaction ID field and a 7-byte roll pointer field.

  • If no primary key is defined for a table, each clustered index record also contains a 6-byte row ID field.

  • Each secondary index record contains all the primary key columns defined for the clustered index key that are not in the secondary index.

  • A record contains a pointer to each field of the record. If the total length of the fields in a record is less than 128 bytes, the pointer is one byte; otherwise, two bytes. The array of pointers is called the record directory. The area where the pointers point is the data part of the record.

  • Internally, fixed-length character columns such as CHAR(10) are stored in fixed-length format. Trailing spaces are not truncated from VARCHAR columns.

  • Fixed-length columns greater than or equal to 768 bytes are encoded as variable-length columns, which can be stored off-page. For example, a CHAR(255) column can exceed 768 bytes if the maximum byte length of the character set is greater than 3, as it is with utf8mb4.

  • An SQL NULL value reserves one or two bytes in the record directory. An SQL NULL value reserves zero bytes in the data part of the record if stored in a variable-length column. For a fixed-length column, the fixed length of the column is reserved in the data part of the record. Reserving fixed space for NULL values permits columns to be updated in place from NULL to non-NULL values without causing index page fragmentation.

COMPACT Row Format

The COMPACT row format reduces row storage space by about 20% compared to the REDUNDANT row format, at the cost of increasing CPU use for some operations. If your workload is a typical one that is limited by cache hit rates and disk speed, COMPACT format is likely to be faster. If the workload is limited by CPU speed, compact format might be slower.

The COMPACT row format is supported by both InnoDB file formats (Antelope and Barracuda). For more information, see Section 14.10, “InnoDB File-Format Management”.

Tables that use the COMPACT row format store the first 768 bytes of variable-length column values (VARCHAR, VARBINARY, and BLOB and TEXT types) in the index record within the B-tree node, with the remainder stored on overflow pages. Fixed-length columns greater than or equal to 768 bytes are encoded as variable-length columns, which can be stored off-page. For example, a CHAR(255) column can exceed 768 bytes if the maximum byte length of the character set is greater than 3, as it is with utf8mb4.

If the value of a column is 768 bytes or less, an overflow page is not used, and some savings in I/O may result, since the value is stored entirely in the B-tree node. This works well for relatively short BLOB column values, but may cause B-tree nodes to fill with data rather than key values, reducing their efficiency. Tables with many BLOB columns could cause B-tree nodes to become too full, and contain too few rows, making the entire index less efficient than if rows were shorter or column values were stored off-page.

COMPACT Row Format Storage Characteristics

The COMPACT row format has the following storage characteristics:

  • Each index record contains a 5-byte header that may be preceded by a variable-length header. The header is used to link together consecutive records, and for row-level locking.

  • The variable-length part of the record header contains a bit vector for indicating NULL columns. If the number of columns in the index that can be NULL is N, the bit vector occupies CEILING(N/8) bytes. (For example, if there are anywhere from 9 to 16 columns that can be NULL, the bit vector uses two bytes.) Columns that are NULL do not occupy space other than the bit in this vector. The variable-length part of the header also contains the lengths of variable-length columns. Each length takes one or two bytes, depending on the maximum length of the column. If all columns in the index are NOT NULL and have a fixed length, the record header has no variable-length part.

  • For each non-NULL variable-length field, the record header contains the length of the column in one or two bytes. Two bytes are only needed if part of the column is stored externally in overflow pages or the maximum length exceeds 255 bytes and the actual length exceeds 127 bytes. For an externally stored column, the 2-byte length indicates the length of the internally stored part plus the 20-byte pointer to the externally stored part. The internal part is 768 bytes, so the length is 768+20. The 20-byte pointer stores the true length of the column.

  • The record header is followed by the data contents of non-NULL columns.

  • Records in the clustered index contain fields for all user-defined columns. In addition, there is a 6-byte transaction ID field and a 7-byte roll pointer field.

  • If no primary key is defined for a table, each clustered index record also contains a 6-byte row ID field.

  • Each secondary index record contains all the primary key columns defined for the clustered index key that are not in the secondary index. If any of the primary key columns are variable length, the record header for each secondary index has a variable-length part to record their lengths, even if the secondary index is defined on fixed-length columns.

  • Internally, for nonvariable-length character sets, fixed-length character columns such as CHAR(10) are stored in a fixed-length format.

    Trailing spaces are not truncated from VARCHAR columns.

  • Internally, for variable-length character sets such as utf8mb3 and utf8mb4, InnoDB attempts to store CHAR(N) in N bytes by trimming trailing spaces. If the byte length of a CHAR(N) column value exceeds N bytes, trailing spaces are trimmed to a minimum of the column value byte length. The maximum length of a CHAR(N) column is the maximum character byte length × N.

    A minimum of N bytes is reserved for CHAR(N). Reserving the minimum space N in many cases enables column updates to be done in place without causing index page fragmentation. By comparison, CHAR(N) columns occupy the maximum character byte length × N when using the REDUNDANT row format.

    Fixed-length columns greater than or equal to 768 bytes are encoded as variable-length fields, which can be stored off-page. For example, a CHAR(255) column can exceed 768 bytes if the maximum byte length of the character set is greater than 3, as it is with utf8mb4.

DYNAMIC Row Format

The DYNAMIC row format offers the same storage characteristics as the COMPACT row format but adds enhanced storage capabilities for long variable-length columns and supports large index key prefixes.

The Barracuda file format supports the DYNAMIC row format. See Section 14.10, “InnoDB File-Format Management”.

When a table is created with ROW_FORMAT=DYNAMIC, InnoDB can store long variable-length column values (for VARCHAR, VARBINARY, and BLOB and TEXT types) fully off-page, with the clustered index record containing only a 20-byte pointer to the overflow page. Fixed-length fields greater than or equal to 768 bytes are encoded as variable-length fields. For example, a CHAR(255) column can exceed 768 bytes if the maximum byte length of the character set is greater than 3, as it is with utf8mb4.

Whether columns are stored off-page depends on the page size and the total size of the row. When a row is too long, the longest columns are chosen for off-page storage until the clustered index record fits on the B-tree page. TEXT and BLOB columns that are less than or equal to 40 bytes are stored in line.

The DYNAMIC row format maintains the efficiency of storing the entire row in the index node if it fits (as do the COMPACT and REDUNDANT formats), but the DYNAMIC row format avoids the problem of filling B-tree nodes with a large number of data bytes of long columns. The DYNAMIC row format is based on the idea that if a portion of a long data value is stored off-page, it is usually most efficient to store the entire value off-page. With DYNAMIC format, shorter columns are likely to remain in the B-tree node, minimizing the number of overflow pages required for a given row.

The DYNAMIC row format supports index key prefixes up to 3072 bytes. This feature is controlled by the innodb_large_prefix variable, which is enabled by default. See the innodb_large_prefix variable description for more information.

Tables that use the DYNAMIC row format can be stored in the system tablespace, file-per-table tablespaces, and general tablespaces. To store DYNAMIC tables in the system tablespace, either disable innodb_file_per_table and use a regular CREATE TABLE or ALTER TABLE statement, or use the TABLESPACE [=] innodb_system table option with CREATE TABLE or ALTER TABLE. The innodb_file_per_table and innodb_file_format variables are not applicable to general tablespaces, nor are they applicable when using the TABLESPACE [=] innodb_system table option to store DYNAMIC tables in the system tablespace.

DYNAMIC Row Format Storage Characteristics

The DYNAMIC row format is a variation of the COMPACT row format. For storage characteristics, see COMPACT Row Format Storage Characteristics.

COMPRESSED Row Format

The COMPRESSED row format offers the same storage characteristics and capabilities as the DYNAMIC row format but adds support for table and index data compression.

The Barracuda file format supports the COMPRESSED row format. See Section 14.10, “InnoDB File-Format Management”.

The COMPRESSED row format uses similar internal details for off-page storage as the DYNAMIC row format, with additional storage and performance considerations from the table and index data being compressed and using smaller page sizes. With the COMPRESSED row format, the KEY_BLOCK_SIZE option controls how much column data is stored in the clustered index, and how much is placed on overflow pages. For more information about the COMPRESSED row format, see Section 14.9, “InnoDB Table and Page Compression”.

The COMPRESSED row format supports index key prefixes up to 3072 bytes. This feature is controlled by the innodb_large_prefix variable, which is enabled by default. See the innodb_large_prefix variable description for more information.

Tables that use the COMPRESSED row format can be created in file-per-table tablespaces or general tablespaces. The system tablespace does not support the COMPRESSED row format. To store a COMPRESSED table in a file-per-table tablespace, the innodb_file_per_table variable must be enabled and innodb_file_format must be set to Barracuda. The innodb_file_per_table and innodb_file_format variables are not applicable to general tablespaces. General tablespaces support all row formats with the caveat that compressed and uncompressed tables cannot coexist in the same general tablespace due to different physical page sizes. For more information about, see Section 14.6.3.3, “General Tablespaces”.

Compressed Row Format Storage Characteristics

The COMPRESSED row format is a variation of the COMPACT row format. For storage characteristics, see COMPACT Row Format Storage Characteristics.

Defining the Row Format of a Table

The default row format for InnoDB tables is defined by innodb_default_row_format variable, which has a default value of DYNAMIC. The default row format is used when the ROW_FORMAT table option is not defined explicitly or when ROW_FORMAT=DEFAULT is specified.

The row format of a table can be defined explicitly using the ROW_FORMAT table option in a CREATE TABLE or ALTER TABLE statement. For example:

CREATE TABLE t1 (c1 INT) ROW_FORMAT=DYNAMIC;

An explicitly defined ROW_FORMAT setting overrides the default row format. Specifying ROW_FORMAT=DEFAULT is equivalent to using the implicit default.

The innodb_default_row_format variable can be set dynamically:

mysql> SET GLOBAL innodb_default_row_format=DYNAMIC;

Valid innodb_default_row_format options include DYNAMIC, COMPACT, and REDUNDANT. The COMPRESSED row format, which is not supported for use in the system tablespace, cannot be defined as the default. It can only be specified explicitly in a CREATE TABLE or ALTER TABLE statement. Attempting to set the innodb_default_row_format variable to COMPRESSED returns an error:

mysql> SET GLOBAL innodb_default_row_format=COMPRESSED;
ERROR 1231 (42000): Variable 'innodb_default_row_format'
can't be set to the value of 'COMPRESSED'

Newly created tables use the row format defined by the innodb_default_row_format variable when a ROW_FORMAT option is not specified explicitly, or when ROW_FORMAT=DEFAULT is used. For example, the following CREATE TABLE statements use the row format defined by the innodb_default_row_format variable.

CREATE TABLE t1 (c1 INT);
CREATE TABLE t2 (c1 INT) ROW_FORMAT=DEFAULT;

When a ROW_FORMAT option is not specified explicitly, or when ROW_FORMAT=DEFAULT is used, an operation that rebuilds a table silently changes the row format of the table to the format defined by the innodb_default_row_format variable.

Table-rebuilding operations include ALTER TABLE operations that use ALGORITHM=COPY or ALGORITHM=INPLACE where table rebuilding is required. See Section 14.13.1, “Online DDL Operations” for more information. OPTIMIZE TABLE is also a table-rebuilding operation.

The following example demonstrates a table-rebuilding operation that silently changes the row format of a table created without an explicitly defined row format.

mysql> SELECT @@innodb_default_row_format;
+-----------------------------+
| @@innodb_default_row_format |
+-----------------------------+
| dynamic                     |
+-----------------------------+

mysql> CREATE TABLE t1 (c1 INT);

mysql> SELECT * FROM INFORMATION_SCHEMA.INNODB_SYS_TABLES WHERE NAME LIKE 'test/t1' \G
*************************** 1. row ***************************
     TABLE_ID: 54
         NAME: test/t1
         FLAG: 33
       N_COLS: 4
        SPACE: 35
  FILE_FORMAT: Barracuda
   ROW_FORMAT: Dynamic
ZIP_PAGE_SIZE: 0
   SPACE_TYPE: Single

mysql> SET GLOBAL innodb_default_row_format=COMPACT;

mysql> ALTER TABLE t1 ADD COLUMN (c2 INT);

mysql> SELECT * FROM INFORMATION_SCHEMA.INNODB_SYS_TABLES WHERE NAME LIKE 'test/t1' \G
*************************** 1. row ***************************
     TABLE_ID: 55
         NAME: test/t1
         FLAG: 1
       N_COLS: 5
        SPACE: 36
  FILE_FORMAT: Antelope
   ROW_FORMAT: Compact
ZIP_PAGE_SIZE: 0
   SPACE_TYPE: Single

Consider the following potential issues before changing the row format of existing tables from REDUNDANT or COMPACT to DYNAMIC.

  • The REDUNDANT and COMPACT row formats support a maximum index key prefix length of 767 bytes whereas DYNAMIC and COMPRESSED row formats support an index key prefix length of 3072 bytes. In a replication environment, if the innodb_default_row_format variable is set to DYNAMIC on the master, and set to COMPACT on the slave, the following DDL statement, which does not explicitly define a row format, succeeds on the master but fails on the slave:

    CREATE TABLE t1 (c1 INT PRIMARY KEY, c2 VARCHAR(5000), KEY i1(c2(3070)));

    For related information, see Section 14.23, “InnoDB Limits”.

  • Importing a table that does not explicitly define a row format results in a schema mismatch error if the innodb_default_row_format setting on the source server differs from the setting on the destination server. For more information, Section 14.6.1.3, “Importing InnoDB Tables”.

Determining the Row Format of a Table

To determine the row format of a table, use SHOW TABLE STATUS:

mysql> SHOW TABLE STATUS IN test1\G
*************************** 1. row ***************************
           Name: t1
         Engine: InnoDB
        Version: 10
     Row_format: Dynamic
           Rows: 0
 Avg_row_length: 0
    Data_length: 16384
Max_data_length: 0
   Index_length: 16384
      Data_free: 0
 Auto_increment: 1
    Create_time: 2016-09-14 16:29:38
    Update_time: NULL
     Check_time: NULL
      Collation: latin1_swedish_ci
       Checksum: NULL
 Create_options: 
        Comment: 

Alternatively, query the INFORMATION_SCHEMA.INNODB_TABLES table:

mysql> SELECT NAME, ROW_FORMAT FROM INFORMATION_SCHEMA.INNODB_SYS_TABLES WHERE NAME='test1/t1';
+----------+------------+
| NAME     | ROW_FORMAT |
+----------+------------+
| test1/t1 | Dynamic    |
+----------+------------+

14.12 InnoDB Disk I/O and File Space Management

As a DBA, you must manage disk I/O to keep the I/O subsystem from becoming saturated, and manage disk space to avoid filling up storage devices. The ACID design model requires a certain amount of I/O that might seem redundant, but helps to ensure data reliability. Within these constraints, InnoDB tries to optimize the database work and the organization of disk files to minimize the amount of disk I/O. Sometimes, I/O is postponed until the database is not busy, or until everything needs to be brought to a consistent state, such as during a database restart after a fast shutdown.

This section discusses the main considerations for I/O and disk space with the default kind of MySQL tables (also known as InnoDB tables):

  • Controlling the amount of background I/O used to improve query performance.

  • Enabling or disabling features that provide extra durability at the expense of additional I/O.

  • Organizing tables into many small files, a few larger files, or a combination of both.

  • Balancing the size of redo log files against the I/O activity that occurs when the log files become full.

  • How to reorganize a table for optimal query performance.

14.12.1 InnoDB Disk I/O

InnoDB uses asynchronous disk I/O where possible, by creating a number of threads to handle I/O operations, while permitting other database operations to proceed while the I/O is still in progress. On Linux and Windows platforms, InnoDB uses the available OS and library functions to perform native asynchronous I/O. On other platforms, InnoDB still uses I/O threads, but the threads may actually wait for I/O requests to complete; this technique is known as simulated asynchronous I/O.

Read-Ahead

If InnoDB can determine there is a high probability that data might be needed soon, it performs read-ahead operations to bring that data into the buffer pool so that it is available in memory. Making a few large read requests for contiguous data can be more efficient than making several small, spread-out requests. There are two read-ahead heuristics in InnoDB:

  • In sequential read-ahead, if InnoDB notices that the access pattern to a segment in the tablespace is sequential, it posts in advance a batch of reads of database pages to the I/O system.

  • In random read-ahead, if InnoDB notices that some area in a tablespace seems to be in the process of being fully read into the buffer pool, it posts the remaining reads to the I/O system.

For information about configuring read-ahead heuristics, see Section 14.8.3.4, “Configuring InnoDB Buffer Pool Prefetching (Read-Ahead)”.

Doublewrite Buffer

InnoDB uses a novel file flush technique involving a structure called the doublewrite buffer, which is enabled by default in most cases (innodb_doublewrite=ON). It adds safety to recovery following a crash or power outage, and improves performance on most varieties of Unix by reducing the need for fsync() operations.

Before writing pages to a data file, InnoDB first writes them to a contiguous tablespace area called the doublewrite buffer. Only after the write and the flush to the doublewrite buffer has completed does InnoDB write the pages to their proper positions in the data file. If there is an operating system, storage subsystem, or mysqld process crash in the middle of a page write (causing a torn page condition), InnoDB can later find a good copy of the page from the doublewrite buffer during recovery.

If system tablespace files (ibdata files) are located on Fusion-io devices that support atomic writes, doublewrite buffering is automatically disabled and Fusion-io atomic writes are used for all data files. Because the doublewrite buffer setting is global, doublewrite buffering is also disabled for data files residing on non-Fusion-io hardware. This feature is only supported on Fusion-io hardware and is only enabled for Fusion-io NVMFS on Linux. To take full advantage of this feature, an innodb_flush_method setting of O_DIRECT is recommended.

14.12.2 File Space Management

The data files that you define in the configuration file using the innodb_data_file_path configuration option form the InnoDB system tablespace. The files are logically concatenated to form the system tablespace. There is no striping in use. You cannot define where within the system tablespace your tables are allocated. In a newly created system tablespace, InnoDB allocates space starting from the first data file.

To avoid the issues that come with storing all tables and indexes inside the system tablespace, you can enable the innodb_file_per_table configuration option (the default), which stores each newly created table in a separate tablespace file (with extension .ibd). For tables stored this way, there is less fragmentation within the disk file, and when the table is truncated, the space is returned to the operating system rather than still being reserved by InnoDB within the system tablespace. For more information, see Section 14.6.3.2, “File-Per-Table Tablespaces”.

You can also store tables in general tablespaces. General tablespaces are shared tablespaces created using CREATE TABLESPACE syntax. They can be created outside of the MySQL data directory, are capable of holding multiple tables, and support tables of all row formats. For more information, see Section 14.6.3.3, “General Tablespaces”.

Pages, Extents, Segments, and Tablespaces

Each tablespace consists of database pages. Every tablespace in a MySQL instance has the same page size. By default, all tablespaces have a page size of 16KB; you can reduce the page size to 8KB or 4KB by specifying the innodb_page_size option when you create the MySQL instance. You can also increase the page size to 32KB or 64KB. For more information, refer to the innodb_page_size documentation.

The pages are grouped into extents of size 1MB for pages up to 16KB in size (64 consecutive 16KB pages, or 128 8KB pages, or 256 4KB pages). For a page size of 32KB, extent size is 2MB. For page size of 64KB, extent size is 4MB. The files inside a tablespace are called segments in InnoDB. (These segments are different from the rollback segment, which actually contains many tablespace segments.)

When a segment grows inside the tablespace, InnoDB allocates the first 32 pages to it one at a time. After that, InnoDB starts to allocate whole extents to the segment. InnoDB can add up to 4 extents at a time to a large segment to ensure good sequentiality of data.

Two segments are allocated for each index in InnoDB. One is for nonleaf nodes of the B-tree, the other is for the leaf nodes. Keeping the leaf nodes contiguous on disk enables better sequential I/O operations, because these leaf nodes contain the actual table data.

Some pages in the tablespace contain bitmaps of other pages, and therefore a few extents in an InnoDB tablespace cannot be allocated to segments as a whole, but only as individual pages.

When you ask for available free space in the tablespace by issuing a SHOW TABLE STATUS statement, InnoDB reports the extents that are definitely free in the tablespace. InnoDB always reserves some extents for cleanup and other internal purposes; these reserved extents are not included in the free space.

When you delete data from a table, InnoDB contracts the corresponding B-tree indexes. Whether the freed space becomes available for other users depends on whether the pattern of deletes frees individual pages or extents to the tablespace. Dropping a table or deleting all rows from it is guaranteed to release the space to other users, but remember that deleted rows are physically removed only by the purge operation, which happens automatically some time after they are no longer needed for transaction rollbacks or consistent reads. (See Section 14.3, “InnoDB Multi-Versioning”.)

How Pages Relate to Table Rows

The maximum row length is slightly less than half a database page for 4KB, 8KB, 16KB, and 32KB innodb_page_size settings. For example, the maximum row length is slightly less than 8KB for the default 16KB InnoDB page size. For 64KB pages, the maximum row length is slightly less than 16KB.

If a row does not exceed the maximum row length, all of it is stored locally within the page. If a row exceeds the maximum row length, variable-length columns are chosen for external off-page storage until the row fits within the maximum row length limit. External off-page storage for variable-length columns differs by row format:

  • COMPACT and REDUNDANT Row Formats

    When a variable-length column is chosen for external off-page storage, InnoDB stores the first 768 bytes locally in the row, and the rest externally into overflow pages. Each such column has its own list of overflow pages. The 768-byte prefix is accompanied by a 20-byte value that stores the true length of the column and points into the overflow list where the rest of the value is stored. See Section 14.11, “InnoDB Row Formats”.

  • DYNAMIC and COMPRESSED Row Formats

    When a variable-length column is chosen for external off-page storage, InnoDB stores a 20-byte pointer locally in the row, and the rest externally into overflow pages. See Section 14.11, “InnoDB Row Formats”.

LONGBLOB and LONGTEXT columns must be less than 4GB, and the total row length, including BLOB and TEXT columns, must be less than 4GB.

14.12.3 InnoDB Checkpoints

Making your log files very large may reduce disk I/O during checkpointing. It often makes sense to set the total size of the log files as large as the buffer pool or even larger. Although in the past large log files could make crash recovery take excessive time, starting with MySQL 5.5, performance enhancements to crash recovery make it possible to use large log files with fast startup after a crash. (Strictly speaking, this performance improvement is available for MySQL 5.1 with the InnoDB Plugin 1.0.7 and higher. It is with MySQL 5.5 that this improvement is available in the default InnoDB storage engine.)

How Checkpoint Processing Works

InnoDB implements a checkpoint mechanism known as fuzzy checkpointing. InnoDB flushes modified database pages from the buffer pool in small batches. There is no need to flush the buffer pool in one single batch, which would disrupt processing of user SQL statements during the checkpointing process.

During crash recovery, InnoDB looks for a checkpoint label written to the log files. It knows that all modifications to the database before the label are present in the disk image of the database. Then InnoDB scans the log files forward from the checkpoint, applying the logged modifications to the database.

14.12.4 Defragmenting a Table

Random insertions into or deletions from a secondary index can cause the index to become fragmented. Fragmentation means that the physical ordering of the index pages on the disk is not close to the index ordering of the records on the pages, or that there are many unused pages in the 64-page blocks that were allocated to the index.

One symptom of fragmentation is that a table takes more space than it should take. How much that is exactly, is difficult to determine. All InnoDB data and indexes are stored in B-trees, and their fill factor may vary from 50% to 100%. Another symptom of fragmentation is that a table scan such as this takes more time than it should take:

SELECT COUNT(*) FROM t WHERE non_indexed_column <> 12345;

The preceding query requires MySQL to perform a full table scan, the slowest type of query for a large table.

To speed up index scans, you can periodically perform a null ALTER TABLE operation, which causes MySQL to rebuild the table:

ALTER TABLE tbl_name ENGINE=INNODB

You can also use ALTER TABLE tbl_name FORCE to perform a null alter operation that rebuilds the table.

Both ALTER TABLE tbl_name ENGINE=INNODB and ALTER TABLE tbl_name FORCE use online DDL. For more information, see Section 14.13, “InnoDB and Online DDL”.

Another way to perform a defragmentation operation is to use mysqldump to dump the table to a text file, drop the table, and reload it from the dump file.